hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12011978/chunk_1/iprscan-20080502-12011978.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0751 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00168.20.fs C2 domain 186.6 6.4e-55 2 PF00168.20.ls C2 domain 190.6 3.5e-54 2 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 19.7 0.0066 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00595.14.ls 1/1 457 542 .. 1 86 [] 19.7 0.0066 PF00168.20.fs 1/2 611 702 .. 1 88 [] 104.5 1.6e-30 PF00168.20.ls 1/2 611 702 .. 1 88 [] 106.5 7.2e-29 PF00168.20.ls 2/2 1061 1148 .. 1 88 [] 84.1 4.1e-22 PF00168.20.fs 2/2 1061 1148 .. 1 88 [] 82.1 7.4e-24 Alignments of top-scoring domains: PF00595.14.ls: domain 1 of 1, from 457 to 542: score 19.7, E = 0.0066 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr + +++++ ++ lG++++gg+ +++ +f+++v +G + A+ G KIAA0751 457 DGSVPRD-SGAMLGLKVVGGKMTESgRLCAFITKVKKG-SLADTVGH 501 LqaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* L++GD +l+ NG+ l + + ee+ ++ +s+ + +v L+v KIAA0751 502 LRPGDEVLEWNGRLLQGATFEEVYNIILESKPePQVELVVS 542 PF00168.20.fs: domain 1 of 2, from 611 to 702: score 104.5, E = 1.6e-30 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt L Vt++ Ak+Lp + ++ +PYVk+y+++d++d++k++Tk++kkt KIAA0751 611 LIVTILGAKDLPSRE-DGRPRNPYVKIYFLPDRSDkNKRRTKTVKKT 656 lNPvWNEtFtFe.vpppdlqe.tLeieVyDydrfgr..ddflGevs<-* l P+WN+tF +++v+ ++ e++Lei+++D r++ ++ +flGe+ KIAA0751 657 LEPKWNQTFIYSpVHRREFRErMLEITLWDQARVREeeSEFLGEIL 702 PF00168.20.ls: domain 1 of 2, from 611 to 702: score 106.5, E = 7.2e-29 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt L Vt++ Ak+Lp + ++ +PYVk+y+++d++d++k++Tk++kkt KIAA0751 611 LIVTILGAKDLPSRE-DGRPRNPYVKIYFLPDRSDkNKRRTKTVKKT 656 lNPvWNEtFtFe.vpppdlqe.tLeieVyDydrfgr..ddflGevs<-* l P+WN+tF +++v+ ++ e++Lei+++D r++ ++ +flGe+ KIAA0751 657 LEPKWNQTFIYSpVHRREFRErMLEITLWDQARVREeeSEFLGEIL 702 PF00168.20.ls: domain 2 of 2, from 1061 to 1148: score 84.1, E = 4.1e-22 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt L+V +i+A++L k +++ ++ PYVkvyl++ +++ kkkTkv++kt KIAA0751 1061 LEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCiAKKKTKVARKT 1107 lNPvWNEtFtFevpppdlqetLeieVy.DydrfgrddflGevs<-* l P + + + Fe p++++ L+i V++Dy+r+ + f+G ++ KIAA0751 1108 LEPLYQQLLSFE-ESPQGKV-LQIIVWgDYGRMDHKSFMGVAQ 1148 PF00168.20.fs: domain 2 of 2, from 1061 to 1148: score 82.1, E = 7.4e-24 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt L+V +i+A++L k +++ ++ PYVkvyl++ +++ kkkTkv++kt KIAA0751 1061 LEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCiAKKKTKVARKT 1107 lNPvWNEtFtFevpppdlqetLeieVy.DydrfgrddflGevs<-* l P + + + Fe p++++ L+i V++Dy+r+ + f+G ++ KIAA0751 1108 LEPLYQQLLSFE-ESPQGKV-LQIIVWgDYGRMDHKSFMGVAQ 1148 //