hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11593004/chunk_1/iprscan-20080502-11593004.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0750 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00033 71.6 1e-16 1 SM00132 48.0 1.3e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00033 1/1 519 618 .. 1 100 [] 71.6 1e-16 SM00132 1/1 1002 1056 .. 1 52 [] 48.0 1.3e-09 Alignments of top-scoring domains: SM00033: domain 1 of 1, from 519 to 618: score 71.6, E = 1e-16 *->eeeallrWinsll......kvtnfssdlkDGvvLckLlnslsPagsv + ll W++ ++++ ++ +vt++++++++G++Lc+ +++++P +++ KIAA0750 519 RPSKLLTWCQQQTegyqhvNVTDLTTSWRSGLALCAIIHRFRP-ELI 564 dkkk..rfkkleNinlalsfaeklgafLGvgkvvlfdpeDlvegnenkkl +++ ++ ++ eN +la+++ae++ +g+++ +++++ + +++ KIAA0750 565 NFDSlnEDDAVENNQLAFDVAERE-----FGIPPVTTGKEMASAQ--EPD 607 ilgviwtLirl<-* l+ +++L+ + KIAA0750 608 KLSMVMYLSKF 618 SM00132: domain 1 of 1, from 1002 to 1056: score 48.0, E = 1.3e-09 *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg...tffekd C C+k ++ +e+l+a+g+ +H eCF+Cs+C ++L+ tf ++ KIAA0750 1002 TCYFCKKRVYVMERLSAEGHFFHRECFRCSICATTLRLaayTFDCDE 1048 gklyCkdc<-* gk+yCk++ KIAA0750 1049 GKFYCKPH 1056 //