hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11593004/chunk_1/iprscan-20080502-11593004.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0750 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00307.21.ls Calponin homology (CH) domain 117.5 3.5e-32 1 PF00307.21.fs Calponin homology (CH) domain 115.6 1.3e-31 1 PF01494.9.fs FAD binding domain 39.4 8.1e-12 1 PF00412.12.fs LIM domain 26.1 6.3e-07 1 PF07992.4.fs Pyridine nucleotide-disulphide oxidored 24.9 2.3e-06 1 PF00412.12.ls LIM domain 28.1 2.6e-06 1 PF00890.14.fs FAD binding domain 21.2 3.4e-06 1 PF01266.14.fs FAD dependent oxidoreductase 19.1 2.7e-05 1 PF01946.7.fs Thi4 family 17.1 2.9e-05 1 PF01494.9.ls FAD binding domain -136.2 0.0053 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01494.9.fs 1/1 87 125 .. 1 39 [. 39.4 8.1e-12 PF01494.9.ls 1/1 87 358 .. 1 384 [] -136.2 0.0053 PF01266.14.fs 1/1 89 120 .. 1 32 [. 19.1 2.7e-05 PF07992.4.fs 1/1 89 118 .. 1 36 [. 24.9 2.3e-06 PF00890.14.fs 1/1 91 118 .. 1 31 [. 21.2 3.4e-06 PF01946.7.fs 1/1 92 122 .. 32 64 .. 17.1 2.9e-05 PF00307.21.ls 1/1 518 623 .. 1 122 [] 117.5 3.5e-32 PF00307.21.fs 1/1 518 623 .. 1 122 [] 115.6 1.3e-31 PF00412.12.ls 1/1 1003 1062 .. 1 61 [] 28.1 2.6e-06 PF00412.12.fs 1/1 1003 1062 .. 1 61 [] 26.1 6.3e-07 Alignments of top-scoring domains: PF01494.9.fs: domain 1 of 1, from 87 to 125: score 39.4, E = 8.1e-12 *->etdVLIVGgGPaGLmlAllLaraGvrvvvvErhaetsvl<-* t+ LIVGgGP+GL +A++La G++vvvvE+++++s++ KIAA0750 87 NTKCLIVGGGPCGLRTAIELAYLGAKVVVVEKRDSFSRN 125 PF01494.9.ls: domain 1 of 1, from 87 to 358: score -136.2, E = 0.0053 *->etdVLIVGgGPaGLmlAllLaraGvrvvvvErhaetsvlprIRAggl t+ LIVGgGP+GL +A++La G++vvvvE+++++s++ +l KIAA0750 87 NTKCLIVGGGPCGLRTAIELAYLGAKVVVVEKRDSFSRNN-----VL 128 nqRTMElLrqaGledrilaegaphegmglffgatSlaGDElgrirtwgti + + + + +Gl ga++ + g+f + KIAA0750 129 HLWPFTIHDLRGL-------GAKKFY-GKFCAGS---------------- 154 pdaradldFetlltsptrvtvypQnelEpiLrehAeelGsadirfgtevl +d + s ++ + iL + A +lG ++i+++ e++ KIAA0750 155 ------ID----HISIRQLQL--------ILFKVALMLG-VEIHVNVEFV 185 sfe.....qDgdgVtAvvrdrrtgeeiEiytvrArYlVGcDGgrStVRka +++++++q+ +++ + + t+ +++ + ++G+DG+ R + KIAA0750 186 KVLeppedQENQKIGWRAEFLPTDHS--LSEFEFDVIIGADGR----RNT 229 l.GiefeGeg.tiypagsldvlfdapdlselvegrafvvylilnphsrGf l+G+ ++ +++++ a + +f ++ + ++ G+ KIAA0750 230 LeGFRRKEFRgKL--AIAITANFINRNST----------AEAKVEEISGV 267 glgiavvRmvgPtrsgglerrvivvpfgekvedrpeevteeelkqalrea +++ ++ +++++ e + ++ e ++ KIAA0750 268 --------AFIFNQK-------FFQDLKE-----ETGIDLE-------NI 290 tgidfllveitw...ksawgvasrvAdryRkG.RVFLAGDAAHihPPtGG + +++ ++ + ++ +k+ + ++ + +y + + +++ KIAA0750 291 VYYKDCTHYFVMtakKQSLLDKGVIINDYIDTeMLLC------------- 327 qGlNtgiQDAfNLaWKLAaVLrGtAgeeLLDtYeaERrpvaqav....vd A+ + ++ L++Y +E++++a+ + +++d KIAA0750 328 -----------------AENVN----QDNLLSYAREAADFATNYqlpsLD 356 ra<-* +a KIAA0750 357 FA 358 PF01266.14.fs: domain 1 of 1, from 89 to 120: score 19.1, E = 2.7e-05 *->DVvVIGGGivGlstAyhLakrGlsVtllErgd<-* + +++GGG Gl tA +La G++V+++E++d KIAA0750 89 KCLIVGGGPCGLRTAIELAYLGAKVVVVEKRD 120 PF07992.4.fs: domain 1 of 1, from 89 to 118: score 24.9, E = 2.3e-06 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->dvvIIGgGpAGlaAAirlaralgefglkvalitEEk<-* +++I+GgGp Gl++Ai+la l g+kv+++ Ek KIAA0750 89 KCLIVGGGPCGLRTAIELAY-L---GAKVVVV--EK 118 PF00890.14.fs: domain 1 of 1, from 91 to 118: score 21.2, E = 3.4e-06 *->DVvViGsGlAGLaAAleaAeaGlkkVavvek<-* +++G+G GL+ A+e+A G+ kV+vvek KIAA0750 91 --LIVGGGPCGLRTAIELAYLGA-KVVVVEK 118 PF01946.7.fs: domain 1 of 1, from 92 to 122: score 17.1, E = 2.9e-05 *->IVGAGpSGLtAAYyLAkkRPglKVaiiErslSp<-* IVG+Gp+GL +A +LA g+KV++ E++ S+ KIAA0750 92 IVGGGPCGLRTAIELAYL--GAKVVVVEKRDSF 122 PF00307.21.ls: domain 1 of 1, from 518 to 623: score 117.5, E = 3.5e-32 *->sqekellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLca ++ ll+W++++++gy++ v++t+++t+w+ +GlaLca KIAA0750 518 IRPSKLLTWCQQQTEGYQH---------VNVTDLTTSWR-SGLALCA 554 LlnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeD +++++rP+li+++ sl++ d++eN +la+d+ae+e +gi ++ ++++ KIAA0750 555 IIHRFRPELINFD---SLNEDDAVENNQLAFDVAERE-FGI-PPVTTGKE 599 ivegnpdPDeklvltllwqLirrfq<-* +++ + PD+++ +++l+ ++ f+ KIAA0750 600 MASAQE-PDKLSMVMYLSKFYELFR 623 PF00307.21.fs: domain 1 of 1, from 518 to 623: score 115.6, E = 1.3e-31 *->sqekellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLca ++ ll+W++++++gy++ v++t+++t+w+ +GlaLca KIAA0750 518 IRPSKLLTWCQQQTEGYQH---------VNVTDLTTSWR-SGLALCA 554 LlnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeD +++++rP+li+++ sl++ d++eN +la+d+ae+e +gi ++ ++++ KIAA0750 555 IIHRFRPELINFD---SLNEDDAVENNQLAFDVAERE-FGI-PPVTTGKE 599 ivegnpdPDeklvltllwqLirrfq<-* +++ + PD+++ +++l+ ++ f+ KIAA0750 600 MASAQE-PDKLSMVMYLSKFYELFR 623 PF00412.12.ls: domain 1 of 1, from 1003 to 1062: score 28.1, E = 2.6e-06 *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg C+ C+k++y e++ A ++ +H+eCFrC+ C ++L ++f d+ KIAA0750 1003 CYFCKKRVYVMERL-SAEGHFFHRECFRCSICATTLRLAAYTFDCDE 1048 sklYCkhDyyklfg<-* +k+YCk+++ ++ KIAA0750 1049 GKFYCKPHFIHCKT 1062 PF00412.12.fs: domain 1 of 1, from 1003 to 1062: score 26.1, E = 6.3e-07 *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg C+ C+k++y e++ A ++ +H+eCFrC+ C ++L ++f d+ KIAA0750 1003 CYFCKKRVYVMERL-SAEGHFFHRECFRCSICATTLRLAAYTFDCDE 1048 sklYCkhDyyklfg<-* +k+YCk+++ ++ KIAA0750 1049 GKFYCKPHFIHCKT 1062 //