# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk04254.fasta.huge -Q ../query/KIAA0748.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0748, 472 aa
 vs ./tmplib.23663 library

1987033 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.4811+/-0.00634; mu= 15.1231+/- 0.432
 mean_var=157.5178+/-36.685, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.102190

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1927  ( 1325 res)   hj03131                    (1325)  498 85.5 2.4e-17


>>KIAA1927  ( 1325 res)   hj03131                         (1325 aa)
 initn: 488 init1: 361 opt: 498  Z-score: 403.3  bits: 85.5 E(): 2.4e-17
Smith-Waterman score: 507;  30.649% identity (60.179% similar) in 447 aa overlap (6-447:137-544)

                                         10        20          30  
KIAA07                          CLTFLGN-PINKIEDWLQDCGYSEEGFS--EEAGQ
                                     :: : .::  ::.::  .  : :  :....
KIAA19 DLSTEATTQDEEEDEEEDLPGAQLPAAGGRGNVPNEKIAIWLKDC-RTPLGASLDEQSSS
        110       120       130       140       150        160     

             40        50         60         70        80        90
KIAA07 FIYNGFCSHGTSFEDDLTLGAEATLL-AANGKLFS-RSFLETARPCQLLDLGCSLASSSM
        . . .  .: ::::::.:::::. :  ..... .  ..:   :  :. . : :. :.. 
KIAA19 TLKGVLVRNGGSFEDDLSLGAEANHLHESDAQIENCNNILAKERRLQFHQKGRSMNSTG-
         170       180       190       200       210       220     

              100       110       120       130       140       150
KIAA07 TGGTNKTSSSISEILDKVQEDAEDVLFSLGFGQEDHKDTSRIPARFFTTPSQAKGIDFQL
       .: .. : ::.::.:.  .:: :..:..::::...   .:.::.:::.. : :::::...
KIAA19 SGKSSGTVSSVSELLELYEEDPEEILYNLGFGRDEPDIASKIPSRFFNSSSFAKGIDIKV
          230       240       250       260       270       280    

              160       170       180       190       200       210
KIAA07 FLKSQVRRIEMEDPCLMLASRFKQVQTLAVTADAFFCLYSYVSKTPVQKFTPSHMFWNCN
       ::..:..:.:.:.:   :.:::.:...:...:.::  ::: :: ::.:..  :    . :
KIAA19 FLSAQMQRMEVENPNYALTSRFRQIEVLTTVANAFSSLYSQVSGTPLQRIG-SMSSVTSN
          290       300       310       320       330        340   

              220       230       240       250       260       270
KIAA07 HPTDVPSIRILSREPEPQSPRDRLRKAISKMCLYTCPRDRPPPPHNTPKRNSLDQVVLEV
       . :: :    :.:    ..  .:: :..::. :  :         ..:. ..    .:.:
KIAA19 KETDPPPP--LTR----SNTANRLMKTLSKLNL--CVDKTEKGESSSPSPSAEKGKILNV
           350             360       370         380       390     

              280       290       300       310       320       330
KIAA07 MDKVKEEKQFLQQDSDLGQFSQEDPVPPAEGKKLPTSPYPCVFCCEEETQQRMSTVLAPS
         .: ::.    . .:  : ::.        ::  .:    :   .::..   ..:   .
KIAA19 --SVIEESG---NKND--QKSQK-----IMKKKESSSMLATV---KEEVSGSSAAV---T
           400            410            420          430          

              340       350       360       370       380       390
KIAA07 QTLDSNPKVPCCTHSLPIEDPQWSTDPAQIRRELCSLPATNTETHPAKDETFWKRKSRAR
       .. ::. ..   ..:    . . .:.  : ..        . :.  ...    :  :   
KIAA19 ENADSD-RISDEANS----NFNQGTENEQSKETQSHESKLGEESGIVES----KLDSDFN
       440        450           460       470       480            

              400       410       420       430       440       450
KIAA07 KSLFQKNLMGRKVKSLDLSITQQKWKQSVDRPELRRSLSQQPQDTFDLEEVQSNSEEEQS
        :  ..   . ..::. .:  ...    .  : .:  ..:: .:.:..:::::.  :   
KIAA19 ISSHSELENSSELKSVHISTPEKEPCAPLTIPSIRNIMTQQ-KDSFEMEEVQSTEGEAPH
      490       500       510       520        530       540       

              460       470                                        
KIAA07 QSRWPSRPRHPHHHQTFAGKDS                                      
                                                                   
KIAA19 VPATYQLGLTKSKRDHLLRTASQHSDSSGFAEDSTDCLSLNHLQVQESLQAMGSSADSCD
       550       560       570       580       590       600       




472 residues in 1 query   sequences
1987033 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:14:30 2008 done: Thu Dec 18 15:14:30 2008
 Total Scan time:  0.430 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]