hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11542406/chunk_1/iprscan-20080502-11542406.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0747 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00239 333.9 1.1e-95 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00239 1/5 288 390 .. 1 92 [] 71.5 1.1e-16 SM00239 2/5 437 541 .. 1 92 [] 51.7 9.5e-11 SM00239 3/5 616 718 .. 1 92 [] 98.9 5.9e-25 SM00239 4/5 767 860 .. 1 92 [] 52.5 5.3e-11 SM00239 5/5 955 1060 .. 1 92 [] 59.3 5.1e-13 Alignments of top-scoring domains: SM00239: domain 1 of 5, from 288 to 390: score 71.5, E = 1.1e-16 *->tLtvkiisArnLp..............DPYVkvs......kTkvvkk +++++++ Ar+L ++++ ++ +++DPY+ v+ ++++ +++v+ KIAA0747 288 IIRIHLLAARGLSskdkyvkgliegksDPYALVRlgtqtfCSRVIDE 334 tlsgfNPvWnEesetFeFevpp...s.LeieVyDk.....dfiGrvtipp l NP+W+E t+e+ v++ +++++e+eV+Dk+++++df+Gr ++ KIAA0747 335 EL---NPQWGE---TYEVMVHEvpgQeIEVEVFDKdpdkdDFLGRMKLD- 377 nnahqhsadglihlsell.ggrh.kl<-* + ++l+ + + KIAA0747 378 -------------VGKVLqASVLdDW 390 SM00239: domain 2 of 5, from 437 to 541: score 51.7, E = 9.5e-11 *->tLtvkiisArnLp..................DPYVkvs......kTk +L v++ +A++Lp ++ ++ +++++ ++P V +s ++ ++ +k KIAA0747 437 ILVVYLDRAQDLPmvtselyppqlkkgnkepNPMVQLSiqdvtqESK 483 vvkktlsgfNPvWnEesetFeFevpp...s.LeieVyDk...dfiGrvti v t+ +PvW+E F F ++++++++L ++V+D+++ +G +t+ KIAA0747 484 AVYSTN---CPVWEE---AFRFFLQDpqsQeLDVQVKDDsraLTLGALTL 527 ppnnahqhsadglihlsell.ggrh.kl<-* p l +ll+ ++ KIAA0747 528 P--------------LARLLtAPELiLD 541 SM00239: domain 3 of 5, from 616 to 718: score 98.9, E = 5.9e-25 *->tLtvkiisArnLp..............DPYVkvs......kTkvvkk +L++++++A++L+ +++ ++ ++++DPYVk++ +++ +++vv+ KIAA0747 616 VLRIHVLEAQDLIakdrflgglvkgksDPYVKLKlagrsfRSHVVRE 662 tlsgfNPvWnEesetFeFevpp...s.LeieVyDk.....dfiGrvtipp l NP+WnE Fe+ v++ ++++Le+eV+Dk+ +++df+Gr+ ++ KIAA0747 663 DL---NPRWNE---VFEVIVTSvpgQeLEVEVFDKdldkdDFLGRCKVR- 705 nnahqhsadglihlsell.ggrh.kl<-* l+++l++g +++ KIAA0747 706 -------------LTTVLnSGFLdEW 718 SM00239: domain 4 of 5, from 767 to 860: score 52.5, E = 5.3e-11 *->tLtvkiisArnLp........DPYVkvs......kTkvvkktlsgfN +L +++ +A++Lp ++++++ PY++++ +++++kTk++ t KIAA0747 767 LLSIYMERAEDLPlrkgtkhlSPYATLTvgdsshKTKTISQTS---A 810 PvWnEesetFeFevpp...s.LeieVyDk..dfiGrvtippnnahqhsad PvW+E + F + +++ +Le++V +++ ++G +++p KIAA0747 811 PVWDE---SASFLIRKphtEsLELQVRGEgtGVLGSLSLP---------- 847 glihlsell.ggrh.kl<-* lsell + KIAA0747 848 ----LSELLvADQLcLD 860 SM00239: domain 5 of 5, from 955 to 1060: score 59.3, E = 5.1e-13 *->tLtvkiisArnLp.......DPYVkvs...........kTkvvkktl +L ++ +r L+ ++++++DPYV + ++++++++++T+ +k+tl KIAA0747 955 KLVSIVHGCRSLRqngrdppDPYVSLLllpdknrgtkrRTSQKKRTL 1001 sgfNPvWnEesetFeFevpp.....s.LeieVyDk........dfiGrvt +P++nE Fe e+p ++ ++++L ++V++ ++ +++++++G+v+ KIAA0747 1002 ---SPEFNE---RFEWELPLdeaqrRkLDVSVKSNssfmsrerELLGKVQ 1045 ippnnahqhsadglihlsell.ggrh.kl<-* ++ l e + +++ ++ KIAA0747 1046 LD--------------LAETDlSQGVaRW 1060 //