hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080909/iprscan-20080909-09403272/chunk_1/iprscan-20080909-09403272.nocrc
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Query sequence: KIAA0734
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00239                                                 141.0    1.2e-37   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00239    1/2     199   368 ..     1    92 []    72.1    7e-17
SM00239    2/2    1029  1137 ..     1    92 []    68.9  6.2e-16

Alignments of top-scoring domains:
SM00239: domain 1 of 2, from 199 to 368: score 72.1, E = 7e-17
                   *->tLtvkiisArnLp........DPYVkvs...................
                       L+v +++A+nL  +++++ +DPY+ +   + ++ ++ ++ ++ ++ 
    KIAA0734   199    ALKVSVMRAKNLLakdpngfsDPYCMLGilpasdatrepraqkeqrf 245  

                   ..................kTkvvkktlsgfNPvWnEesetFeFevpp...
                   + +++++++++ + +  + T+v+  tl   NPvW E   +F Fe+ + ++
    KIAA0734   246 gfrkgskrggplpakciqVTEVKSSTL---NPVWKE---HFLFEIEDvst 289  

                   s.LeieVyDk........................................
                   ++L++ ++D++++ +  +  ++ ++  + ++ ++  +   ++ + +++ +
    KIAA0734   290 DqLHLDIWDHdddvslveacrklneviglkgmgryfkqivksarangtag 339  

                   .......dfiGrvtippnnahqhsadglihlsell.ggrh.kl<-*
                   +++++++df+G+++ip              ++e++  g +++    
    KIAA0734   340 ptedhtdDFLGCLNIP--------------VREVPvAGVDrWF    368  

SM00239: domain 2 of 2, from 1029 to 1137: score 68.9, E = 6.2e-16
                   *->tLtvkiisArnLp........DPYVkvs.............kTkvvk
                      +L v ++ A +L + + ++ +DP+V+v+ ++++  +  ++++T v++
    KIAA0734  1029    RLAVEVLHAADLLpldanglsDPFVIVElgpphlfplvrsqRTQVKT 1075 

                   ktlsgfNPvWnEesetFeFevpp.......s.LeieVyDk......dfiG
                   +tl   +Pv++E    F+F+vp +  +++ + + ++V+D++  +++df G
    KIAA0734  1076 RTL---HPVYDE---LFYFSVPAeacrrraAcVLFTVMDHdwlstnDFAG 1119 

                   rvtippnnahqhsadglihlsell.ggrh.kl<-*
                   ++ ++              l  + +  r+++    
    KIAA0734  1120 EAALG--------------LGGVTgVARPqVG    1137 

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