hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11202905/chunk_1/iprscan-20080502-11202905.nocrc
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Query sequence: KIAA0727
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00242                                                1334.6          0   1
SM00015                                                  28.6    0.00086   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00242    1/1       7   700 ..     1   771 []  1334.6        0
SM00015    1/1     701   723 ..     1    23 []    28.6  0.00086

Alignments of top-scoring domains:
SM00242: domain 1 of 1, from 7 to 700: score 1334.6, E = 0
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                       ++  + g  D+vl++ +++p+++ NL+ R++k+ IYT+iG v+v+v
    KIAA0727     7    EQESLEFGKADFVLMDTVSMPEFMANLRLRFEKGRIYTFIGEVVVSV 53   

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                   NPYk l +iY++++i++Y+      G++++E pPH+FAiAD+AY++M+r+
    KIAA0727    54 NPYKLL-NIYGRDTIEQYK------GRELYERPPHLFAIADAAYKAMKRR 96   

                   keNQsIiISGESGAGKTEatKkimqYLAavsg.....svesvedqiLesN
                   +++ +I+ISGESGAGKTEa+K+imqY+Aa+++++++ +ve+v++++L+sN
    KIAA0727    97 SKDTCIVISGESGAGKTEASKYIMQYIAAITNpsqraEVERVKNMLLKSN 146  

                   PiLEAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVV
                   ++LEAFGNAKT RN+NSSRFGK+++I+Fd+kG+++G++I+nYLLEKSRV+
    KIAA0727   147 CVLEAFGNAKTNRNDNSSRFGKYMDINFDFKGDPIGGHINNYLLEKSRVI 196  

                   sQakgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfa
                    Q++gER++H FYQLL G se++++ l+L+k   s+++Y+Y+  g     
    KIAA0727   197 VQQPGERSFHSFYQLLQGGSEQMLRSLHLQK---SLSSYNYIHVG----- 238  

                   nkryssgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAA
                           + +++i+Da+eF+     +  Am+v+Gf  eE++ +++ilAA
    KIAA0727   239 -------AQLKSSINDAAEFRV----VADAMKVIGFKPEEIQTVYKILAA 277  

                   ILHLGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaL
                   ILHLGN++F  ++   d+  +      + ++++++AeLL  +++  ekaL
    KIAA0727   278 ILHLGNLKFVVDG---DTPLI-----ENGKVVSIIAELLSTKTDMVEKAL 319  

                   tkRkiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINks
                   ++R++ tg++   +i k+++ ++A+y RDA+AKaiY+RLF W+V rIN+ 
    KIAA0727   320 LYRTVATGRD---IIDKQHTEQEASYGRDAFAKAIYERLFCWIVTRINDI 366  

                   l...........sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFn
                   ++ ++ +++ ++++++IGVLDIyGFEiF++NSFEQfCINy+NEKLQQ+F+
    KIAA0727   367 IevknydttihgKNTVIGVLDIYGFEIFDNNSFEQFCINYCNEKLQQLFI 416  

                   qhvFKlEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLD
                   q+v+K+EQEEY+rEGI+W++Id+f  +NQ+++DL+E++   ++GI+++LD
    KIAA0727   417 QLVLKQEQEEYQREGIPWKHIDYF--NNQIIVDLVEQQ---HKGIIAILD 461  

                   EeClfHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkSlkk.gkp.k
                   ++C+   ++k+TD+ Fle Ln++     ++kh hfs+     +k ++++k
    KIAA0727   462 DACMN--VGKVTDEMFLEALNSK-----LGKHAHFSS-----RKlCASdK 499  

                   krfgrtaFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknplias
                     + +++F+i+HYAGdV Y+v GF++KNkDtLf+d++ L+ +S+np++++
    KIAA0727   500 ILEFDRDFRIRHYAGDVVYSVIGFIDKNKDTLFQDFKRLMYNSSNPVLKN 549  

                   LFpeeadqsssaakekssggagksrkagrrepskgtisskkrppTvGsqF
                   ++pe+  + ++                           ++krp T++++F
    KIAA0727   550 MWPEGKLSITE---------------------------VTKRPLTAATLF 572  

                   k.sLneLmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEn
                   k+s+  L+++L+s++P+++RCIKPN++K p++Fd+++++hQ+ ylG+LEn
    KIAA0727   573 KnSMIALVDNLASKEPYYVRCIKPNDKKSPQIFDDERCRHQVEYLGLLEN 622  

                   iRIRraGFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkacea
                   +R+RraGF++R+++++Fl+RYk+++  twp+ +         ++k+a+++
    KIAA0727   623 VRVRRAGFAFRQTYEKFLHRYKMISEFTWPNHD-------LPSDKEAVKK 665  

                   lLqslglgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                   l++++g         ++++++GkTK+F+R+p++l+ LEelR +   
    KIAA0727   666 LIERCG--------FQDDVAYGKTKIFIRTPRTLFTLEELRAQ    700  

SM00015: domain 1 of 1, from 701 to 723: score 28.6, E = 0.00086
                   *->rleraAiiIQaawRGylaRkryk<-*
                       l r+++++Q+ wRG laR ryk   
    KIAA0727   701    MLIRIVLFLQKVWRGTLARMRYK    723  

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