hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11051508/chunk_1/iprscan-20080502-11051508.nocrc
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Query sequence: KIAA0718
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00045                                                 363.9     1e-104   1
SM00046                                                 238.7    4.8e-67   1
SM00109                                                 104.2    1.5e-26   2
SM00054                                                  59.1    5.7e-13   2

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00054      1/2      91   119 ..     1    29 []    31.5  0.00011
SM00054      2/2     136   164 ..     1    29 []    27.6   0.0017
SM00109      1/2     181   232 ..     1    61 []    68.3  9.7e-16
SM00109      2/2     248   296 ..     1    61 []    35.9  5.5e-06
SM00046      1/1     376   500 ..     1   157 []   238.7  4.8e-67
SM00045      1/1     520   700 ..     1   195 []   363.9   1e-104

Alignments of top-scoring domains:
SM00054: domain 1 of 2, from 91 to 119: score 31.5, E = 0.00011
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                      +l+ +Fr++D+Dg+G++d  E+  +++ +   
    KIAA0718    91    KLEFMFRLYDTDGNGFLDSSELENIISQM    119  

SM00054: domain 2 of 2, from 136 to 164: score 27.6, E = 0.0017
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                       l e+++e+D D+dG++++eE++++ ++    
    KIAA0718   136    ILHEMMEEIDYDHDGTVSLEEWIQGGMTT    164  

SM00109: domain 1 of 2, from 181 to 232: score 68.3, E = 9.7e-16
                   *->Hkfvfrtf...kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHk
                       ++v+r ++ +kp++C++C  +++g+ kq     gl+Cs Ck+++H+
    KIAA0718   181    GQHVWRLKhfnKPAYCNLCLNMLIGVGKQ-----GLCCSFCKYTVHE 222  

                   kCaekvpaqshksglsC<-*
                   +C++++p+       sC   
    KIAA0718   223 RCVARAPP-------SC    232  

SM00109: domain 2 of 2, from 248 to 296: score 35.9, E = 5.5e-06
                   *->HkfvfrtfkptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkCa
                      H +v++++ pt+Cd C+k++++++  +    gl C +C+ + H+kCa
    KIAA0718   248    HYWVEGNC-PTKCDKCHKTVKCYQGLT----GLHCVWCQITLHNKCA 289  

                   ekvpaqshksglsC<-*
                   +++ +        C   
    KIAA0718   290 SHLKP-------EC    296  

SM00046: domain 1 of 1, from 376 to 500: score 238.7, E = 4.8e-67
                   *->plLVfvNPkSGggqgeellkseskllrkfrelLnprqVfdltktggp
                      plLVfvNPkSGg+qge       ++ rkf++lLnprqV+ l++ +gp
    KIAA0718   376    PLLVFVNPKSGGKQGE-------RIYRKFQYLLNPRQVYSLSG-NGP 414  

                   dvglelefrdvpkfkeqsdqkgddrvlvcGGDGTvgwVlnaldkrelplq
                    +gl + frdvp+f          rvl+cGGDGTvgwVl++++k++  ++
    KIAA0718   415 MPGLNF-FRDVPDF----------RVLACGGDGTVGWVLDCIEKANVGKH 453  

                   cqvedrefpePPvailPlGTGNdLarvLgwgggydginekllkilkeale
                             PPvailPlGTGNdLar+L+wgggy+g  e+l+kilk+++ 
    KIAA0718   454 ----------PPVAILPLGTGNDLARCLRWGGGYEG--ENLMKILKDIE- 490  

                   eadtvkldrW<-*
                    +  ++ldrW   
    KIAA0718   491 NSTEIMLDRW    500  

SM00045: domain 1 of 1, from 520 to 700: score 363.9, E = 1e-104
                   *->iMNNYFSiGvDAkiaLeFHnsREanPekFnSRlkNKlwYfelGtkel
                      i+NNYFSiGvDA+ia++FH++RE++PekFnSR+kNK+wYfe+Gt+e+
    KIAA0718   520    IINNYFSIGVDASIAHRFHIMREKHPEKFNSRMKNKFWYFEFGTSET 566  

                   fartcKdLheqIeLecDGvdidlpnkdlslEGIivLNIPSygGGtnLWGe
                   f +tcK+Lhe++e+ecDGv idl n  +slEGI++LNIPS++GG+nLWGe
    KIAA0718   567 FSATCKKLHESVEIECDGVQIDLIN--ISLEGIAILNIPSMHGGSNLWGE 614  

                   Pfgskkkravcgifkk......sftdkedlnfekqsidDgllEVVGvtga
                      skk r   +i kk++++++++td ++l+f+ q+++D+llEVVG++ga
    KIAA0718   615 ---SKKRRSHRRIEKKgsdkrtTVTDAKELKFASQDLSDQLLEVVGLEGA 661  

                   mhmaqvrtsiqvglasiilvkllKgrRiaQCsevrlkdtiltkktiPmQV
                   m+m+q++t  +++ a         grR+aQCs v    +i+t+k++PmQ+
    KIAA0718   662 MEMGQIYT--GLKSA---------GRRLAQCSCV----VIRTSKSLPMQI 696  

                   DGEP<-*
                   DGEP   
    KIAA0718   697 DGEP    700  

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