# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk01073.fasta.huge -Q ../query/KIAA0718.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0718, 742 aa vs ./tmplib.23663 library 1986763 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.2285+/-0.00553; mu= 21.6074+/- 0.379 mean_var=113.9440+/-27.665, 0's: 0 Z-trim: 5 B-trim: 137 in 1/39 Lambda= 0.120151 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0145 ( 1198 res) hg01767 (1198) 463 91.9 3.9e-19 KIAA1124 ( 1760 res) fg05708 (1760) 166 40.7 0.0015 KIAA0451 ( 983 res) pf06424 ( 983) 162 39.6 0.0018 >>KIAA0145 ( 1198 res) hg01767 (1198 aa) initn: 951 init1: 414 opt: 463 Z-score: 435.4 bits: 91.9 E(): 3.9e-19 Smith-Waterman score: 708; 36.667% identity (56.061% similar) in 330 aa overlap (181-500:146-430) 160 170 180 190 200 210 KIAA07 TVSLEEWIQGGMTTIPLLVLLGLENNVKDDGQHVWRLKHFNKPAYCNLCLNMLIGVGKQG :.: : .:.:::.: . : :: ..: KIAA01 KEMEDWIAALKTVQNREHFEPTQYSMDHFSGMHNWYACSHARPTYCNVCREALSGVTSHG 120 130 140 150 160 170 220 230 240 250 260 KIAA07 LCCSFCKYTVHERCVARAPPSCIKTYVKSK-----RNTD--VMHHYWVEGNCPT--KCDK : : ::. .:.::..:: .: : . : ...: .: : :.::: :. :: KIAA01 LSCEVCKFKAHKRCAVRATNNCKWTTLASIGKDIIEDADGIAMPHQWLEGNLPVSAKCTV 180 190 200 210 220 230 270 280 290 300 310 320 KIAA07 CHKTVKCYQGLTGLHCVWCQITLHNKCASHLKPECDCGPLKDHILPPTTICPVVLQTLPT : :: : .:.::. .:..: : .: : : ..:::.. KIAA01 CDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTKCPLGLCKVSVIPPTAL---------- 240 250 260 270 280 330 340 350 360 370 380 KIAA07 SGVSVPEERQSTVKKEKSGSQQPNKVIDKNKMQRANSVTVDGQGLQVTPVPGTHPLLVFV ::. :: : : :::::: KIAA01 -----------------------------------NSIDSDGFWKASCPPSCTSPLLVFV 290 300 310 390 400 410 420 430 440 KIAA07 NPKSGGKQGERIYRKFQYLLNPRQVYSLSGNGPMPGLNFFRDVPDFRVLACGGDGTVGWV : ::: .:: .. :.:. :::: ::..: ..:: :: .:. ::.:.:::::.:::: KIAA01 NSKSGDNQGVKFLRRFKQLLNPAQVFDLMNGGPHLGLRLFQKFDTFRILVCGGDGSVGWV 320 330 340 350 360 370 450 460 470 480 490 500 KIAA07 LDCIEKANVGKHPPVAILPLGTGNDLARCLRWGGGYEGEN-LMKILKDIENSTEIMLDRW :. :.. :. :. ...::::::::::: : ::.. . .. : .::. .: .. ::::: KIAA01 LSEIDSLNLHKQCQLGVLPLGTGNDLARVLGWGSACDDDTQLPQILEKLERASTKMLDRW 380 390 400 410 420 430 510 520 530 540 550 560 KIAA07 KFEVIPNDKDEKGDPVPYSIINNYFSIGVDASIAHRFHIMREKHPEKFNSRMKNKFWYFE KIAA01 SVMAYEAKLPRQASSSTVTEDFSEDSEVQQILFYEDSVAAHLSKILTSDQHSVVISSAKV 440 450 460 470 480 490 >>KIAA1124 ( 1760 res) fg05708 (1760 aa) initn: 118 init1: 84 opt: 166 Z-score: 155.7 bits: 40.7 E(): 0.0015 Smith-Waterman score: 166; 24.603% identity (53.175% similar) in 126 aa overlap (163-286:1055-1179) 140 150 160 170 180 190 KIAA07 LNPILHEMMEEIDYDHDGTVSLEEWIQGGMTTIPLLVLLGLENNVKDDGQHVWRLKHFNK ...:: . .: : . .: :.. KIAA11 TQAPKPEASPSMSVAASEQQEDMARPPQRPSAVPLPTTQALALAGPKPKAHQFSIKSFSS 1030 1040 1050 1060 1070 1080 200 210 220 230 240 250 KIAA07 PAYCNLCLNMLIGVGKQGLCCSFCKYTVHERCVARAPPSCIKTYVKSKR--NTDVMHHYW :. :. : ....:. .:: : :... : : :: : .::: ..::.. KIAA11 PTQCSHCTSLMVGLIRQGYACEVCSFACHVSCKDGAPQVCPIPPEQSKRPLGVDVQRGIG 1090 1100 1110 1120 1130 1140 260 270 280 290 300 310 KIAA07 VEGNCPTKCDKCHKTVKCYQGLTGLHCVWCQITLHNKCASHLKPECDCGPLKDHILPPTT . . .: : . : .: .. : :.. :.. KIAA11 TAYKGHVKVPKPTGVKKGWQRAYAVVCD-CKLFLYDLPEGKSTQPGVIASQVLDLRDDEF 1150 1160 1170 1180 1190 1200 320 330 340 350 360 370 KIAA07 ICPVVLQTLPTSGVSVPEERQSTVKKEKSGSQQPNKVIDKNKMQRANSVTVDGQGLQVTP KIAA11 SVSSVLASDVIHATRRDIPCIFRVTASLLGAPSKTSSLLILTENENEKKKWVGILEGLQS 1210 1220 1230 1240 1250 1260 >>KIAA0451 ( 983 res) pf06424 (983 aa) initn: 126 init1: 93 opt: 162 Z-score: 154.2 bits: 39.6 E(): 0.0018 Smith-Waterman score: 162; 34.000% identity (64.000% similar) in 50 aa overlap (183-232:202-251) 160 170 180 190 200 210 KIAA07 SLEEWIQGGMTTIPLLVLLGLENNVKDDGQHVWRLKHFNKPAYCNLCLNMLIGVGKQGLC : . .: :. :. :. : ....:. .:: KIAA04 VDSTPLSVHTPTLRKKGCPGSTGFPPKRKTHQFFVKSFTTPTKCHQCTSLMVGLIRQGCS 180 190 200 210 220 230 220 230 240 250 260 270 KIAA07 CSFCKYTVHERCVARAPPSCIKTYVKSKRNTDVMHHYWVEGNCPTKCDKCHKTVKCYQGL : : .. : :: .:: .: KIAA04 CEVCGFSCHITCVNKAPTTCPVPPEQTKGPLGIDPQKGIGTAYEGHVRIPKPAGVKKGWQ 240 250 260 270 280 290 742 residues in 1 query sequences 1986763 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:13:20 2008 done: Thu Dec 18 15:13:20 2008 Total Scan time: 0.560 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]