hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11033257/chunk_1/iprscan-20080502-11033257.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0717
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
TIGR00231 small_GTP: small GTP-binding protein domain    36.6    2.9e-08   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
TIGR00231   1/1      36   229 ..     1   186 []    36.6  2.9e-08

Alignments of top-scoring domains:
TIGR00231: domain 1 of 1, from 36 to 229: score 36.6, E = 2.9e-08
                   *->lkdikigivGdpnvGkstllnrllgnkgsitesgptd.gttrdyvte
                        +ik+++vGd +vGk+ l+   + n    t+++   + +    + +
    KIAA0717    36    VETIKCVVVGDNAVGKTRLICARACNA-TLTQYQLLAtHVPTVWAID 81   

                   sieedgktit.gat.fqW.gykfnllDtpGlhrqedydalrrlyypevls
                   + ++  + ++++       ++ + l+Dt G     d  ++rr  y ++++
    KIAA0717    82 QYRVCQEVLErSRDvVDDvSVSLRLWDTFG-----DHHKDRRFAYGRSDV 126  

                   slevldlvilvldvedglekdtkeiihhadkygvpillvgnkidlkdekp
                   ++ +++++++ +++  +++ +++ei+h+++   +p++lvg + dl+ +  
    KIAA0717   127 VVLCFSIANP-NSLHHVKTMWYPEIKHFCP--RAPVILVGCQLDLRYADL 173  

                   gyf..............vdlkphlaslfaklngephfiplsaetgkgids
                   + +++ +++  ++ ++++ l+p+ ++++ak  g p + ++s++   gi +
    KIAA0717   174 EAVnrarrplarpikpnEILPPEKGREVAKELGIP-YYETSVVAQFGIKD 222  

                   lfglvea<-*
                   +f++  +   
    KIAA0717   223 VFDNAIR    229  

//