hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11033257/chunk_1/iprscan-20080502-11033257.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0717 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00071.12.fs Ras family 84.6 5.7e-25 2 PF00651.21.fs BTB/POZ domain 90.0 1.3e-24 4 PF00071.12.ls Ras family 65.1 2.1e-16 1 PF00651.21.ls BTB/POZ domain 65.0 2.2e-16 2 PF08477.3.fs Miro-like protein 37.7 1.6e-10 2 PF08477.3.ls Miro-like protein 35.2 2.1e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00071.12.ls 1/1 40 233 .. 1 174 [] 65.1 2.1e-16 PF08477.3.ls 1/1 40 167 .. 1 139 [] 35.2 2.1e-07 PF08477.3.fs 2/2 104 167 .. 69 139 .] 28.4 7.9e-08 PF00071.12.fs 2/2 124 233 .. 72 174 .] 70.9 7.1e-21 PF00651.21.ls 1/2 284 496 .. 1 135 [] 10.3 0.00044 PF00651.21.fs 1/4 284 321 .. 1 49 [. 21.6 1.5e-05 PF00651.21.fs 2/4 450 496 .. 77 135 .] 14.0 0.002 PF00651.21.fs 3/4 514 622 .. 1 135 [] 52.9 2.8e-14 PF00651.21.ls 2/2 514 622 .. 1 135 [] 54.7 2.8e-13 Alignments of top-scoring domains: PF00071.12.ls: domain 1 of 1, from 40 to 233: score 65.1, E = 2.1e-16 *->KlVlvGDgGVGKSsLliR......FtdnkFpeeYipTI.GvDFytkt K+V+vGD +VGK+ L + + + + t+ + ++pT+ +D y+ KIAA0717 40 KCVVVGDNAVGKTRLICAracnatLTQYQLLATHVPTVwAIDQYRVC 86 vevd........gktvkLqIWDTAGQErFralrpaYYRgAqGfLLVYDIT ev +++++ ++ v L +WDT G + + r+ Y +++++L+++I KIAA0717 87 QEVLersrdvvdDVSVSLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSIA 134 srdSFenvk.kWleeilrhadkdenvpivLVGNKcDLeddedlele.kq. ++ S+++vk+ W++ei+++++ p++LVG DL+ ++ le +++ KIAA0717 135 NPNSLHHVKtMWYPEIKHFCP--R-APVILVGCQLDLRYAD---LEaVNr 178 ...........kRqVsteeGealAkelgAlpFmETSAKtneNVeeaFeel +++ ++ ++ + ++e G++ Akelg +p++ETS + +++++F+++ KIAA0717 179 arrplarpikpNEILPPEKGREVAKELG-IPYYETSVVAQFGIKDVFDNA 227 areilk<-* +r++l KIAA0717 228 IRAALI 233 PF08477.3.ls: domain 1 of 1, from 40 to 167: score 35.2, E = 2.1e-07 *->kvvViGdkgvGKSSll.qallgeefppniPrvLpkkklpreiqgsty k+vV+Gd vGK+ l+ ++++ ++ + L ++p+ + y KIAA0717 40 KCVVVGDNAVGKTRLIcARACNATLT---QYQLLATHVPTVWAIDQY 83 avdtlevdgdtklenv.rlkefllilwDtggreelkfehepiAymktaDa v +++ +++ v + l lwDt g+ ++ +A +++D+ KIAA0717 84 RV---CQEVLERSRDVvDDVSVSLRLWDTFGDHHKDRR---FA-YGRSDV 126 vllvyDlsdpeSfervsslikwlpnlrklgkkaiPvilvgnKlD<-* v+l ++ +p+S+++v+ + w+p+++ Pvilvg++lD KIAA0717 127 VVLCFSIANPNSLHHVKTM--WYPEIKHFCPR-APVILVGCQLD 167 PF08477.3.fs: domain 2 of 2, from 104 to 167: score 28.4, E = 7.9e-08 *->lilwDtggreelkfehepiAymktaDavllvyDlsdpeSfervssli l lwDt g+ ++ +A +++D+v+l ++ +p+S+++v+ + KIAA0717 104 LRLWDTFGDHHKDRR---FA-YGRSDVVVLCFSIANPNSLHHVKTM- 145 kwlpnlrklgkkaiPvilvgnKlD<-* w+p+++ Pvilvg++lD KIAA0717 146 -WYPEIKHFCPR-APVILVGCQLD 167 PF00071.12.fs: domain 2 of 2, from 124 to 233: score 70.9, E = 7.1e-21 *->AqGfLLVYDITsrdSFenvk.kWleeilrhadkdenvpivLVGNKcD +++++L+++I ++ S+++vk+ W++ei+++++ p++LVG D KIAA0717 124 SDVVVLCFSIANPNSLHHVKtMWYPEIKHFCP--R-APVILVGCQLD 167 Leddedlele.kq............kRqVsteeGealAkelgAlpFmETS L+ ++ le +++ +++ ++ ++ + ++e G++ Akelg +p++ETS KIAA0717 168 LRYAD---LEaVNrarrplarpikpNEILPPEKGREVAKELG-IPYYETS 213 AKtneNVeeaFeelareilk<-* + +++++F++++r++l KIAA0717 214 VVAQFGIKDVFDNAIRAALI 233 PF00651.21.ls: domain 1 of 2, from 284 to 496: score 10.3, E = 0.00044 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l++ ++ DV+Lv ++ ++++AHK +L+ +S+ F++l KIAA0717 284 LEDPLCA----DVILVLQE-------RVRIFAHKIYLSTSSSKFYDL 319 Ftgqfke.s......................................... F+ ++ e+ ++++++++++++++++++++++++++++++++ + + KIAA0717 320 FLMDLSEgElggpsepggthpedhqghsdqhhhhhhhhhgrdfllraasf 369 .................................................. + ++ ++ +++++ + + +++++ ++++++ +++++ ++ ++ + KIAA0717 370 dvcesvdeaggsgpaglrastsdgilrgngtgylpgrgrvlsswsrafvs 419 ..........iteeessvsseieledvspedfealLefiYtgelsitqdq +++ +++ ++++ v+ + + + ++p f+a+L+++Ytgel+ + KIAA0717 420 iqeemaedplTYKSRLMVV-VKMDSSIQPGPFRAVLKYLYTGELDEN--- 465 ksPssckseenvedlLaaAadllqipslvdaCeefliksl<-* e +++++ ++A +ll++ +l+ ++ + l + KIAA0717 466 --------ERDLMHIAHIA-ELLEVFDLRMMVANILNNEA 496 PF00651.21.fs: domain 1 of 4, from 284 to 321: score 21.6, E = 1.5e-05 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l++ ++ DV+Lv ++ ++++AHK +L+ +S+ F++l KIAA0717 284 LEDPLCA----DVILVLQE-------RVRIFAHKIYLSTSSSKFYDL 319 Ft<-* F+ KIAA0717 320 FL 321 PF00651.21.fs: domain 2 of 4, from 450 to 496: score 14.0, E = 0.002 *->fealLefiYtgelsitqdqksPssckseenvedlLaaAadllqipsl f+a+L+++Ytgel+ + e +++++ ++A +ll++ +l KIAA0717 450 FRAVLKYLYTGELDEN-----------ERDLMHIAHIA-ELLEVFDL 484 vdaCeefliksl<-* + ++ + l + KIAA0717 485 RMMVANILNNEA 496 PF00651.21.fs: domain 3 of 4, from 514 to 622: score 52.9, E = 2.8e-14 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal +e + +g ++DVt+ +d ++ AHK L ++ + a+ KIAA0717 514 VKECLAKGTFSDVTFILDD--------GTISAHKPLLISSCDWMAAM 552 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F g + ess + e+ + s + ++a+Le++Ytg + + KIAA0717 553 FGGP------FVESSTR-EVVFPYTSKSCMRAVLEYLYTGMFTSSP---- 591 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* + + ++l+ +A ++l +p+lv + e++ ++ l KIAA0717 592 ------DLDDMKLIILA-NRLCLPHLVALTEQYTVTGL 622 PF00651.21.ls: domain 2 of 2, from 514 to 622: score 54.7, E = 2.8e-13 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal +e + +g ++DVt+ +d ++ AHK L ++ + a+ KIAA0717 514 VKECLAKGTFSDVTFILDD--------GTISAHKPLLISSCDWMAAM 552 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F g + ess + e+ + s + ++a+Le++Ytg + + KIAA0717 553 FGGP------FVESSTR-EVVFPYTSKSCMRAVLEYLYTGMFTSSP---- 591 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* + + ++l+ +A ++l +p+lv + e++ ++ l KIAA0717 592 ------DLDDMKLIILA-NRLCLPHLVALTEQYTVTGL 622 //