hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10581836/chunk_1/iprscan-20080502-10581836.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0714 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00744 12.9 0.0022 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00744 1/1 1728 1776 .. 1 55 [] 12.9 0.0022 Alignments of top-scoring domains: SM00744: domain 1 of 1, from 1728 to 1776: score 12.9, E = 0.0022 *->iCRIChd..egdegdplvsPCr.CkGslkyVHqeCLerWinesgnkn +C IC+ g +++ ++ Cr+Ck k H +CL +W++ s+++ KIAA0714 1728 DCMICFSviHGFNYSLPKKACRtCK---KKFHSACLYKWFTSSNKS- 1770 spgavtCeiCk<-* tC +C+ KIAA0714 1771 -----TCPLCR 1776 //