hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10492778/chunk_1/iprscan-20080502-10492778.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0709 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00034 902.8 6e-267 8 SM00059 105.4 6.6e-27 1 SM00458 66.9 2.5e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00458 1/1 46 166 .. 1 135 [] 66.9 2.5e-15 SM00059 1/1 185 233 .. 1 49 [] 105.4 6.6e-27 SM00034 1/8 240 365 .. 1 141 [] 127.2 1.9e-33 SM00034 2/8 387 510 .. 1 141 [] 151.4 9.2e-41 SM00034 3/8 526 650 .. 1 141 [] 99.2 4.7e-25 SM00034 4/8 674 814 .. 1 141 [] 113.3 2.8e-29 SM00034 5/8 830 956 .. 1 141 [] 118.6 6.9e-31 SM00034 6/8 977 1113 .. 1 141 [] 131.0 1.3e-34 SM00034 7/8 1130 1249 .. 1 141 [] 75.3 7.3e-18 SM00034 8/8 1266 1399 .. 1 141 [] 86.8 2.7e-21 Alignments of top-scoring domains: SM00458: domain 1 of 1, from 46 to 166: score 66.9, E = 2.5e-15 *->rgyfliiggntglCLdvngnsesksdGnpvqlwdChg.ggnQlWklt +fli++++ + CL+++g++ ++ C+ + ++Q+Wk++ KIAA0709 46 PNVFLIFSHGLQGCLEAQGGQ-------VRVTPACNTsLPAQRWKWV 85 Ynesdgairi.nsdlCLtvng.......tvtlysCdgtdkgndnQkWevn s +++++ ++ +CL++++++++++ ++++y+Cd ++n +W+++ KIAA0709 86 ---SRNRLFNlGTMQCLGTGWpgtnttaSLGMYECDR---EALNLRWHCR 129 kdgtirnpknskkgvdsglcLdvkdgn.....kvqlwtcngsdapnQkWi t+ ++l L+++++n ++++++ +++ s +W+ KIAA0709 130 ---TLGDQ--------LSLLLGARTSNiskpgTLERGDQTRS----GQWR 164 fe<-* ++ KIAA0709 165 IY 166 SM00059: domain 1 of 1, from 185 to 233: score 105.4, E = 6.6e-27 *->gnsdGapCvFPFiYrGksYhdCTseGrndgmlWCsTTsnYDrDgkWg gns+G pC PF+Y ++++h CTs+Gr+dg+lWC+TT++Y +D++Wg KIAA0709 185 GNSHGKPCTIPFKYDNQWFHGCTSTGREDGHLWCATTQDYGKDERWG 231 fC<-* fC KIAA0709 232 FC 233 SM00034: domain 1 of 8, from 240 to 365: score 127.2, E = 1.9e-33 *->CpstpsgWvsyprpnkyfggkCYkfst.....WadAqafCqslgprt C + W + + +++CY+f+ +++ +W +A+a+C+++g KIAA0709 240 C---ETFWDKDQL-----TDSCYQFNFqstlsWREAWASCEQQG--- 275 grvkgghLasIhseeEndFltsl.......yWIGLs.....g.wqWsDGs ++L+sI+ E+++++ l ++ +++ WIGL++ +++g+wqWsD+s KIAA0709 276 -----ADLLSITEIHEQTYINGLltgysstLWIGLNdldtsGgWQWSDNS 320 gviplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls......Wn p y nW ++ +P+n ++++C+v+ + ++++W+ KIAA0709 321 --------PLKYLNWESD----QPDN------PSEENCGVIRtessggWQ 352 dvsCtskdpadklpfiCk<-* + +C+ lp++Ck KIAA0709 353 NRDCSI-----ALPYVCK 365 SM00034: domain 2 of 8, from 387 to 510: score 151.4, E = 9.2e-41 *->CpstpsgWvsyprpnkyfggkCYkfst....WadAqafCqslgprtg C + W ++ +g+CY++ ++++W++++++C + g KIAA0709 387 C---EPSWQPF-------QGHCYRLQAekrsWQESKKACLRGG---- 419 rvkgghLasIhseeEndFltsl.......yWIGLs.....g.wqWsDGsg g+L+sIhs +E++F+t++ +++ ++ WIGL++ + + +++WsDGs KIAA0709 420 ----GDLVSIHSMAELEFITKQikqeveeLWIGLNdlklqMnFEWSDGS- 464 viplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls.....Wndv +vs+t+W+p+ePnn ++++ +dCv+++++ ++Wnd+ KIAA0709 465 -------LVSFTHWHPFEPNN--------FRDSLEDCVTIWgpegrWNDS 499 sCtskdpadklpfiCk<-* +C++ +lp iCk KIAA0709 500 PCNQ-----SLPSICK 510 SM00034: domain 3 of 8, from 526 to 650: score 99.2, E = 4.7e-25 *->CpstpsgWvsyprpnkyfggkCYkfst....WadAqafCqslgprtg C +gW+++ + +CY++ ++ ++++A++ C+++g KIAA0709 526 C---RKGWTWH-------SPSCYWLGEdqvtYSEARRLCTDHG---- 558 rvkgghLasIhseeEndFltsl........yWIGLs.....g.wqWsDGs ++L++I++ E++F++sl + +++ +W+ L++ +++g+++W G KIAA0709 559 ----SQLVTITNRFEQAFVSSLiynwegeyFWTALQdlnstGsFFWLSGD 604 gviplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls.......W v yt+W+++ +P +++g+Cv+l +++ + W KIAA0709 605 --------EVMYTHWNRD----QPG-------YSRGGCVALAtgsamglW 635 ndvsCtskdpadklpfiCk<-* +Cts ++ ++iC KIAA0709 636 EVKNCTS----FRARYICR 650 SM00034: domain 4 of 8, from 674 to 814: score 113.3, E = 2.8e-29 *->CpstpsgWvsyprpnkyfggkCYkfst.........WadAqafCqsl C p+gW s ++ +CYk++++++ +++++W +Aq +Cq+l KIAA0709 674 C---PQGWASDTK-----LRYCYKVFSserlqdkksWVQAQGACQEL 712 gprtgrvkgghLasIhseeEndFltsl.................yWIGLs g ++L+s s eE F++++ ++ ++++++ ++++ +WIGL+ KIAA0709 713 G--------AQLLSLASYEEEHFVANMlnkifgesepeiheqhwFWIGLN 754 .......g.wqWsDGsgviplaltpvsytnWapgePnnePnnkfrhgngg +++++++ +w+WsDG g +sy n++++ rh +++ KIAA0709 755 rrdprggQsWRWSDGVG--------FSYHNFDRS----------RHDDDD 786 ngdCvvls.....WndvsCtskdpadklpfiCk<-* ++C+vl+ + +W + C++ +l +iCk KIAA0709 787 IRGCAVLDlaslqWVAMQCDT-----QLDWICK 814 SM00034: domain 5 of 8, from 830 to 956: score 118.6, E = 6.9e-31 *->CpstpsgWvsyprpnkyfggkCYkfst....WadAqafCqslgprtg W ++ + Ykf+ ++++Wa+Aq++C+ + KIAA0709 830 G---RREWLRF-------QEAEYKFFEhhstWAQAQRICTWFQ---- 862 rvkgghLasIhseeEndFltsl...........yWIGLs.....g.wqWs + L s+hs++E+dFl++ ++ ++ ++++ WIGL++++++g+++W+ KIAA0709 863 ----AELTSVHSQAELDFLSHNlqkfsraqeqhWWIGLHtsesdGrFRWT 908 DGsgviplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls..... DGs ++ Wapg P++ +g++ Cv++ ++ + KIAA0709 909 DGS--------IINFISWAPG----KPRP-----VGKDKKCVYMTasred 941 WndvsCtskdpadklpfiCk<-* W d+ C + lp+iCk KIAA0709 942 WGDQRCLT-----ALPYICK 956 SM00034: domain 6 of 8, from 977 to 1113: score 131.0, E = 1.3e-34 *->CpstpsgWvsyprpnkyfggkCYkfst........WadAqafCqslg C ps+W+++ +kC+++ ++++++ +W++Aq++C+++ KIAA0709 977 C---PSDWIQF-------LNKCFQVQGqepqsrvkWSEAQFSCEQQE 1013 prtgrvkgghLasIhseeEndFltsl.......yWIGLs...g.wqWsDG ++L++I+++ E++F+t ++ + + WIGL+ +++++qW+ KIAA0709 1014 --------AQLVTITNPLEQAFITASlpnvtfdLWIGLHasqRdFQWVEQ 1055 sgviplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls....... ++ y nWapgeP+ P++ +++ ++ +C+v+ ++++ + KIAA0709 1056 E-------PLM-YANWAPGEPS-GPSP--APSGNKPTSCAVVLhspsahf 1094 ...WndvsCtskdpadklpfiCk<-* +++W+d sCt+ ++++fiC+ KIAA0709 1095 tgrWDDRSCTE----ETHGFICQ 1113 SM00034: domain 7 of 8, from 1130 to 1249: score 75.3, E = 7.3e-18 *->CpstpsgWvsyprpnkyfggkCYkfst....WadAqafCqslgprtg p sy + +++ ++ +W+dA+ C+s++ KIAA0709 1130 A---PGTELSY-------LNGTFRLLQkplrWHDALLLCESHN---- 1162 rvkgghLasIhseeEndFltsl.......yWIGLs.....g.wqWsDGsg ++La + +++ ++Flt+ ++ +++ WIGL ++++++++ W+ KIAA0709 1163 ----ASLAYVPDPYTQAFLTQAarglrtpLWIGLAgeegsRrYSWVSEE- 1207 viplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls....Wndvs p +y W++g eP g+C +++ ++ W+++s KIAA0709 1208 -------PLNYVGWQDG----EPQ--------QPGGCTYVDvdgaWRTTS 1238 CtskdpadklpfiCk<-* C++ + ++++C KIAA0709 1239 CDT----KLQGAVCG 1249 SM00034: domain 8 of 8, from 1266 to 1399: score 86.8, E = 2.7e-21 *->Cps..tpsgWvsyprpnkyfggkCYkfst.....WadAqafCqslgp Cp++ +s W+++ +CY f+ + ++ +A++ Cq+ g KIAA0709 1266 CPQglADSAWIPF-------REHCYSFHMelllgHKEARQRCQRAG- 1304 rtgrvkgghLasIhseeEndFltsl..........yWIGLs.....g.wq g +sI +e En F++++ ++ +++++++W+G++ ++++g+ + KIAA0709 1305 -------GAVLSILDEMENVFVWEHlqsyegqsrgAWLGMNfnpkgGtLV 1347 WsDGsgviplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls... W D++ +v+y+nW+p P+ + + ++C + +++ KIAA0709 1348 WQDNT--------AVNYSNWGPPGL--GPS------MLSHNSCYWIQsns 1381 ..WndvsCtskdpadklpfiCk<-* + W++ Ct+ +++ +Ck KIAA0709 1382 glWRPGACTN----ITMGVVCK 1399 //