hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10492778/chunk_1/iprscan-20080502-10492778.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0709 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00059.11.ls Lectin C-type domain 676.3 2.1e-200 8 PF00059.11.fs Lectin C-type domain 672.9 2.3e-199 8 PF00040.10.fs Fibronectin type II domain 75.0 1.3e-28 1 PF00040.10.ls Fibronectin type II domain 77.0 5.5e-20 1 PF00652.12.fs Ricin-type beta-trefoil lectin domain 22.2 8e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00652.12.fs 1/1 51 126 .. 54 141 .] 22.2 8e-07 PF00040.10.ls 1/1 192 233 .. 1 42 [] 77.0 5.5e-20 PF00040.10.fs 1/1 192 233 .. 1 42 [] 75.0 1.3e-28 PF00059.11.ls 1/8 260 366 .. 1 125 [] 121.8 1.7e-33 PF00059.11.fs 1/8 260 366 .. 1 125 [] 120.0 6.2e-33 PF00059.11.ls 2/8 404 511 .. 1 125 [] 130.9 3.3e-36 PF00059.11.fs 2/8 404 511 .. 1 125 [] 129.0 1.2e-35 PF00059.11.ls 3/8 543 651 .. 1 125 [] 94.9 2.2e-25 PF00059.11.fs 3/8 543 651 .. 1 125 [] 93.1 8e-25 PF00059.11.ls 4/8 698 815 .. 1 125 [] 66.1 1e-16 PF00059.11.fs 4/8 698 815 .. 1 125 [] 64.3 3.7e-16 PF00059.11.ls 5/8 847 957 .. 1 125 [] 89.4 1e-23 PF00059.11.fs 5/8 847 957 .. 1 125 [] 87.5 3.7e-23 PF00059.11.ls 6/8 998 1114 .. 1 125 [] 89.3 1.1e-23 PF00059.11.fs 6/8 998 1114 .. 1 125 [] 87.4 4.1e-23 PF00059.11.fs 7/8 1147 1250 .. 1 125 [] 53.7 5.8e-13 PF00059.11.ls 7/8 1147 1250 .. 1 125 [] 55.5 1.7e-13 PF00059.11.ls 8/8 1289 1400 .. 1 125 [] 28.4 1.5e-06 PF00059.11.fs 8/8 1295 1361 .. 7 81 .. 37.9 6e-09 Alignments of top-scoring domains: PF00652.12.fs: domain 1 of 1, from 51 to 126: score 22.2, E = 8e-07 *->irsngnssllCLdvsgggtadGskvvlwpCng.g.gnQrWdydggng i+s+g+++ CL+++gg v+++p +++ ++QrW + + KIAA0709 51 IFSHGLQG--CLEAQGGQ------VRVTPACNtSlPAQRWKWVS--- 86 dgtirnrkdsglCLDvkggs.angtkvilwktCdWkngsanQqW<-* +++ n + + +CL + ++++ + + ++ +Cd ++n +W KIAA0709 87 RNRLFNLG-TMQCLGTGWPGtNTTASLGMY-ECD--REALNLRW 126 PF00040.10.ls: domain 1 of 1, from 192 to 233: score 77.0, E = 5.5e-20 *->CvFPFiynGksYesCTseGRsdgrlWCsTTaNYDrDkkwGFC<-* C PF+y +++++ CTs+GR dg+lWC+TT++Y +D +wGFC KIAA0709 192 CTIPFKYDNQWFHGCTSTGREDGHLWCATTQDYGKDERWGFC 233 PF00040.10.fs: domain 1 of 1, from 192 to 233: score 75.0, E = 1.3e-28 *->CvFPFiynGksYesCTseGRsdgrlWCsTTaNYDrDkkwGFC<-* C PF+y +++++ CTs+GR dg+lWC+TT++Y +D +wGFC KIAA0709 192 CTIPFKYDNQWFHGCTSTGREDGHLWCATTQDYGKDERWGFC 233 PF00059.11.ls: domain 1 of 8, from 260 to 366: score 121.8, E = 1.7e-33 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty ++ +W eA++ C+++g++ L+sI Eq +++ l++ +++ KIAA0709 260 STLSWREAWASCEQQGAD--LLSITEIHEQ----TYINGLLTGYSST 300 aWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEdCv +WIGL+d +t+g w+w +d+sp+ y nW +++P+n E+C+ KIAA0709 301 LWIGLNDLDTSGGWQW----SDNSPLKYL-NWESDQPDNPS----EENCG 341 eiytdtdflaGkWnDepCdsklpyvCef<-* +i+t ++ G W +++C+ lpyvC++ KIAA0709 342 VIRTESS---GGWQNRDCSIALPYVCKK 366 PF00059.11.fs: domain 1 of 8, from 260 to 366: score 120.0, E = 6.2e-33 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty ++ +W eA++ C+++g++ L+sI Eq +++ l++ +++ KIAA0709 260 STLSWREAWASCEQQGAD--LLSITEIHEQ----TYINGLLTGYSST 300 aWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEdCv +WIGL+d +t+g w+w +d+sp+ y nW +++P+n E+C+ KIAA0709 301 LWIGLNDLDTSGGWQW----SDNSPLKYL-NWESDQPDNPS----EENCG 341 eiytdtdflaGkWnDepCdsklpyvCef<-* +i+t ++ G W +++C+ lpyvC++ KIAA0709 342 VIRTESS---GGWQNRDCSIALPYVCKK 366 PF00059.11.ls: domain 2 of 8, from 404 to 511: score 130.9, E = 3.3e-36 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty e+++W+e+++aC + gg+ LvsI+s +E +f+t+ +k + KIAA0709 404 EKRSWQESKKACLRGGGD--LVSIHSMAEL----EFITKQIKQEVEE 444 aWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEdCv +WIGL+d + ++++w +dgs v++t +W p ePnn + EdCv KIAA0709 445 LWIGLNDLKLQMNFEW----SDGSLVSFT-HWHPFEPNNFRD--SLEDCV 487 eiytdtdflaGkWnDepCdsklpyvCef<-* i++ G+WnD pC+++lp +C++ KIAA0709 488 TIWGP----EGRWNDSPCNQSLPSICKK 511 PF00059.11.fs: domain 2 of 8, from 404 to 511: score 129.0, E = 1.2e-35 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty e+++W+e+++aC + gg+ LvsI+s +E +f+t+ +k + KIAA0709 404 EKRSWQESKKACLRGGGD--LVSIHSMAEL----EFITKQIKQEVEE 444 aWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEdCv +WIGL+d + ++++w +dgs v++t +W p ePnn + EdCv KIAA0709 445 LWIGLNDLKLQMNFEW----SDGSLVSFT-HWHPFEPNNFRD--SLEDCV 487 eiytdtdflaGkWnDepCdsklpyvCef<-* i++ G+WnD pC+++lp +C++ KIAA0709 488 TIWGP----EGRWNDSPCNQSLPSICKK 511 PF00059.11.ls: domain 3 of 8, from 543 to 651: score 94.9, E = 2.2e-25 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkk.snt + t+ eA+ C+ +g++ Lv+I ++ Eq af++sl+ + + KIAA0709 543 DQVTYSEARRLCTDHGSQ--LVTITNRFEQ----AFVSSLIYNwEGE 583 yaWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEdC y+W+ L d n+ g++ w +g v+yt +W++++P ++ ++ C KIAA0709 584 YFWTALQDLNSTGSFFW----LSGDEVMYT-HWNRDQP-GYS----RGGC 623 veiytdtdflaGkWnDepCdskl.pyvCef<-* v++ t+++ G+W ++C s + +y+C KIAA0709 624 VALATGSA--MGLWEVKNCTSFRaRYICRQ 651 PF00059.11.fs: domain 3 of 8, from 543 to 651: score 93.1, E = 8e-25 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkk.snt + t+ eA+ C+ +g++ Lv+I ++ Eq af++sl+ + + KIAA0709 543 DQVTYSEARRLCTDHGSQ--LVTITNRFEQ----AFVSSLIYNwEGE 583 yaWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEdC y+W+ L d n+ g++ w +g v+yt +W++++P ++ ++ C KIAA0709 584 YFWTALQDLNSTGSFFW----LSGDEVMYT-HWNRDQP-GYS----RGGC 623 veiytdtdflaGkWnDepCdskl.pyvCef<-* v++ t+++ G+W ++C s + +y+C KIAA0709 624 VALATGSA--MGLWEVKNCTSFRaRYICRQ 651 PF00059.11.ls: domain 4 of 8, from 698 to 815: score 66.1, E = 1e-16 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkk.... +k+W +A+ aCq++g++ L+s s+eE fv++ l++++++++++ KIAA0709 698 DKKSWVQAQGACQELGAQ--LLSLASYEEEHFVANMLNKIFGEsepe 742 ..sntyaWIGLt..dintegtwvwegwetdgspvnyt..enWapgePnnr + ++ +WIGL+++d+ + +w w +dg + +y + + + ++ + r KIAA0709 743 ihEQHWFWIGLNrrDPRGGQSWRW----SDGVGFSYHnfDRSRHDDDDIR 788 gnhGgnEdCveiytdtdflaGkWnDepCdsklpyvCef<-* g C+++ + +W + Cd++l ++C+ KIAA0709 789 G-------CAVLDLA----SLQWVAMQCDTQLDWICKI 815 PF00059.11.fs: domain 4 of 8, from 698 to 815: score 64.3, E = 3.7e-16 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkk.... +k+W +A+ aCq++g++ L+s s+eE fv++ l++++++++++ KIAA0709 698 DKKSWVQAQGACQELGAQ--LLSLASYEEEHFVANMLNKIFGEsepe 742 ..sntyaWIGLt..dintegtwvwegwetdgspvnyt..enWapgePnnr + ++ +WIGL+++d+ + +w w +dg + +y + + + ++ + r KIAA0709 743 ihEQHWFWIGLNrrDPRGGQSWRW----SDGVGFSYHnfDRSRHDDDDIR 788 gnhGgnEdCveiytdtdflaGkWnDepCdsklpyvCef<-* g C+++ + +W + Cd++l ++C+ KIAA0709 789 G-------CAVLDLA----SLQWVAMQCDTQLDWICKI 815 PF00059.11.ls: domain 5 of 8, from 847 to 957: score 89.4, E = 1e-23 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkk.... tWa+A+ C+ ++ L+s++s++E +fl+ + k ++ KIAA0709 847 HHSTWAQAQRICTWFQAE--LTSVHSQAEL----DFLSHNLQKfsra 887 sntyaWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgn + WIGL+ + ++g + w tdgs n+ Wapg P +g + KIAA0709 888 QEQHWWIGLHTSESDGRFRW----TDGSIINFI-SWAPGKPRPVGK---D 929 EdCveiytdtdflaGkWnDepCdsklpyvCef<-* Cv +++++ W D C + lpy+C++ KIAA0709 930 KKCVYMTASRE----DWGDQRCLTALPYICKR 957 PF00059.11.fs: domain 5 of 8, from 847 to 957: score 87.5, E = 3.7e-23 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkk.... tWa+A+ C+ ++ L+s++s++E +fl+ + k ++ KIAA0709 847 HHSTWAQAQRICTWFQAE--LTSVHSQAEL----DFLSHNLQKfsra 887 sntyaWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgn + WIGL+ + ++g + w tdgs n+ Wapg P +g + KIAA0709 888 QEQHWWIGLHTSESDGRFRW----TDGSIINFI-SWAPGKPRPVGK---D 929 EdCveiytdtdflaGkWnDepCdsklpyvCef<-* Cv +++++ W D C + lpy+C++ KIAA0709 930 KKCVYMTASRE----DWGDQRCLTALPYICKR 957 PF00059.11.ls: domain 6 of 8, from 998 to 1114: score 89.3, E = 1.1e-23 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty ++ W eA+ C+++ ++ Lv+I ++ Eq af+t +++ ++ KIAA0709 998 SRVKWSEAQFSCEQQEAQ--LVTITNPLEQ----AFITASLPNVTFD 1038 aWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnh..GgnE. +WIGL+ + +++w + +p++y+ nWapgeP++ ++G + + KIAA0709 1039 LWIGLH--ASQRDFQW----VEQEPLMYA-NWAPGEPSGPSPApsGNKPt 1081 dCveiytdtdfl..aGkWnDepCdskl.pyvCef<-* C+++ + ++++ +G+W+D++C + ++++C++ KIAA0709 1082 SCAVVLHS-PSAhfTGRWDDRSCTEEThGFICQK 1114 PF00059.11.fs: domain 6 of 8, from 998 to 1114: score 87.4, E = 4.1e-23 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty ++ W eA+ C+++ ++ Lv+I ++ Eq af+t +++ ++ KIAA0709 998 SRVKWSEAQFSCEQQEAQ--LVTITNPLEQ----AFITASLPNVTFD 1038 aWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnh..GgnE. +WIGL+ + +++w + +p++y+ nWapgeP++ ++G + + KIAA0709 1039 LWIGLH--ASQRDFQW----VEQEPLMYA-NWAPGEPSGPSPApsGNKPt 1081 dCveiytdtdfl..aGkWnDepCdskl.pyvCef<-* C+++ + ++++ +G+W+D++C + ++++C++ KIAA0709 1082 SCAVVLHS-PSAhfTGRWDDRSCTEEThGFICQK 1114 PF00059.11.fs: domain 7 of 8, from 1147 to 1250: score 53.7, E = 5.8e-13 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty ++ W++A l C++++++ L+ + +++ q aflt+ + t KIAA0709 1147 KPLRWHDALLLCESHNAS--LAYVPDPYTQ----AFLTQAARGLRTP 1187 aWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEdCv +WIGL + ++ + w ++ +p+ny W +geP+ g+ C KIAA0709 1188 LWIGLAGEEGSRRYSW----VSEEPLNYV-GWQDGEPQQPGG------CT 1226 eiytdtdflaGkWnDepCdskl.pyvCef<-* + d G W +Cd+kl+++vC KIAA0709 1227 YVDVD-----GAWRTTSCDTKLqGAVCGV 1250 PF00059.11.ls: domain 7 of 8, from 1147 to 1250: score 55.5, E = 1.7e-13 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty ++ W++A l C++++++ L+ + +++ q aflt+ + t KIAA0709 1147 KPLRWHDALLLCESHNAS--LAYVPDPYTQ----AFLTQAARGLRTP 1187 aWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEdCv +WIGL + ++ + w ++ +p+ny W +geP+ g+ C KIAA0709 1188 LWIGLAGEEGSRRYSW----VSEEPLNYV-GWQDGEPQQPGG------CT 1226 eiytdtdflaGkWnDepCdskl.pyvCef<-* + d G W +Cd+kl+++vC KIAA0709 1227 YVDVD-----GAWRTTSCDTKLqGAVCGV 1250 PF00059.11.ls: domain 8 of 8, from 1289 to 1400: score 28.4, E = 1.5e-06 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty eA++ Cq++gg +sI ++ E+ fv++ l+s + + KIAA0709 1289 LLLGHKEARQRCQRAGGA--VLSILDEMENVFVWEHLQSYEG-QSRG 1332 aWIGLtdintegtwvwegwetdgspvnytenWap...gePnnrgnhGgnE aW+G++ +++ gt vw d++ vny+ nW p++ g++ +n KIAA0709 1333 AWLGMNFNPKGGTLVW----QDNTAVNYS-NWGPpglGPSMLSHN----- 1372 dCveiytdtdflaGkWnDepCdskl.pyvCef<-* C i+++ +G+W +C ++vC+ KIAA0709 1373 SCYWIQSN----SGLWRPGACTNITmGVVCKL 1400 PF00059.11.fs: domain 8 of 8, from 1295 to 1361: score 37.9, E = 6e-09 *->eAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksntyaWIGLt eA++ Cq++gg +sI ++ E+ fv++ l+s + + aW+G++ KIAA0709 1295 EARQRCQRAGGA--VLSILDEMENVFVWEHLQSYEG-QSRGAWLGMN 1338 dintegtwvwegwetdgspvnytenWap<-* +++ gt vw d++ vny+ nW p KIAA0709 1339 FNPKGGTLVW----QDNTAVNYS-NWGP 1361 //