# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ah06501.fasta.huge -Q ../query/KIAA0709.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0709, 1484 aa
 vs ./tmplib.23663 library

1986021 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.7152+/-0.00535; mu= 21.9889+/- 0.365
 mean_var=109.0118+/-26.325, 0's: 0 Z-trim: 3  B-trim: 4 in 1/39
 Lambda= 0.122839

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0022  ( 231 res)   ha00480                     ( 231)  242 53.7 4.9e-08


>>KIAA0022  ( 231 res)   ha00480                          (231 aa)
 initn: 246 init1:  94 opt: 242  Z-score: 236.1  bits: 53.7 E(): 4.9e-08
Smith-Waterman score: 245;  24.201% identity (56.621% similar) in 219 aa overlap (1266-1481:23-225)

        1240      1250      1260      1270      1280      1290     
KIAA07 TTSCDTKLQGAVCGVSSGPPPPRRISYHGSCPQGLADSAWIPFREHCYSFHMELLLGH--
                                     ::    .:.:: :.. :: : .: .  .  
KIAA00         LRAALPALLLPLLGLAAAAVADCP----SSTWIQFQDSCYIFLQEAIKVESI
                       10        20            30        40        

          1300      1310      1320      1330      1340      1350   
KIAA07 KEARQRCQRAGGAVLSILDEMENVFVWEHLQSYEGQSRGAWLGMNFNPKGGTLVWQDNTA
       ...:..:   :. ..:: .: ::.:. . :..         ::: ..   ... : ::. 
KIAA00 EDVRNQCTDHGADMISIHNEEENAFILDTLKKQWKGPDDILLGMFYDTDDASFKWFDNSN
       50        60        70        80        90       100        

          1360      1370      1380      1390       1400      1410  
KIAA07 VNYSNWGPPGLGPSMLSHNSCYWIQSNSGLWRPGACTNITM-GVVCKLPRAEQSSFSPSA
       .....:       ...  ..: ... ..: :. : :   .. :..::     . ..    
KIAA00 MTFDKWTDQDDDEDLV--DTCAFLHIKTGEWKKGNCEVSSVEGTLCKTAIPYKRKY----
      110       120         130       140       150       160      

           1420      1430      1440      1450      1460      1470  
KIAA07 LPENPAALVVVLMAVLLLLALLTAALILYRRRQSIERGAFEGARYSRSSSSPTEATEKNI
       : .:   . ....:  ..:..: : . .  ...:  :  :  . .: . .::   .:  .
KIAA00 LSDNHILISALVIASTVILTVLGAIIWFLYKKHSDSR--FTTV-FSTAPQSPY--NEDCV
            170       180       190         200        210         

           1480       
KIAA07 LVSDMEMNEQQE   
       ::   : ::      
KIAA00 LVVG-EENEYPVQFD
       220        230 




1484 residues in 1 query   sequences
1986021 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:12:57 2008 done: Thu Dec 18 15:12:58 2008
 Total Scan time:  0.820 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]