hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10442013/chunk_1/iprscan-20080502-10442013.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0706 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00225.13.ls Kinesin motor domain 588.7 5.2e-174 1 PF00225.13.fs Kinesin motor domain 587.0 1.7e-173 1 PF00498.16.fs FHA domain 42.0 8.3e-12 1 PF00498.16.ls FHA domain 43.7 5.8e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00225.13.fs 1/1 31 369 .. 1 424 [] 587.0 1.7e-173 PF00225.13.ls 1/1 31 369 .. 1 424 [] 588.7 5.2e-174 PF00498.16.fs 1/1 543 610 .. 1 94 [] 42.0 8.3e-12 PF00498.16.ls 1/1 543 610 .. 1 94 [] 43.7 5.8e-10 Alignments of top-scoring domains: PF00225.13.fs: domain 1 of 1, from 31 to 369: score 587.0, E = 1.7e-173 *->RvRPlnerEksrgssdvvnv..sedvessvitn.gkektFtFDkVFd RvRP+n+rE+s ++++vv++++ + +++++++++ +k+FtFD+ ++ KIAA0706 31 RVRPFNARETSQDAKCVVSMqgNTTSIINPKQSkDAPKSFTFDYSYW 77 peatQelse.p.YAsqefvyestakplvesvleGyNvtIFAYGQTGSGKT ++++ e+p++Asq++vy++++++++ +++eGyNv+IFAYGQTG+GK+ KIAA0706 78 SHTS---TEdPqFASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKS 124 YTMeGstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkpv YTM+G + + + Gi P +edlF+r++e++ KIAA0706 125 YTMMGRQE---------------PGQQGIVPQLCEDLFSRVSENQSA--- 156 fKPklnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIY +l++sv+vSy+EIY KIAA0706 157 ------------------------------------QLSYSVEVSYMEIY 170 NEkirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGL +E++rDLL+p+ ++ + Lr+re+p G +yV++L KIAA0706 171 CERVRDLLNPK-------------SRGS-LRVREHPILG-----PYVQDL 201 teveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntd + Vts+ ++ +l++ Gnk Rtva+T+mNe+SSRSHa+Fti+ +qr +d KIAA0706 202 SKLAVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRCHD 251 ttgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaa + ++ + +vsk++LVDLAGSERa+ +g A g RLkE+a KIAA0706 252 QLTGLDSE---------KVSKISLVDLAGSERADSSG---ARGMRLKEGA 289 nINkSLsaLGnVInALadnq....kssHiPYRDSKLTrLLQDSLGGGDNs nINkSL +LG+VI+ALad q++++ks++iPYRDS+LT+LL++ LGG Ns KIAA0706 290 NINKSLTTLGKVISALADMQskkrKSDFIPYRDSVLTWLLKENLGG--NS 337 KTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-* +T+MIa +SP++ nyeETLsTLr+A+R K+I+ KIAA0706 338 RTAMIAALSPADI----NYEETLSTLRYADRTKQIR 369 PF00225.13.ls: domain 1 of 1, from 31 to 369: score 588.7, E = 5.2e-174 *->RvRPlnerEksrgssdvvnv..sedvessvitn.gkektFtFDkVFd RvRP+n+rE+s ++++vv++++ + +++++++++ +k+FtFD+ ++ KIAA0706 31 RVRPFNARETSQDAKCVVSMqgNTTSIINPKQSkDAPKSFTFDYSYW 77 peatQelse.p.YAsqefvyestakplvesvleGyNvtIFAYGQTGSGKT ++++ e+p++Asq++vy++++++++ +++eGyNv+IFAYGQTG+GK+ KIAA0706 78 SHTS---TEdPqFASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKS 124 YTMeGstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkpv YTM+G + + + Gi P +edlF+r++e++ KIAA0706 125 YTMMGRQE---------------PGQQGIVPQLCEDLFSRVSENQSA--- 156 fKPklnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIY +l++sv+vSy+EIY KIAA0706 157 ------------------------------------QLSYSVEVSYMEIY 170 NEkirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGL +E++rDLL+p+ ++ + Lr+re+p G +yV++L KIAA0706 171 CERVRDLLNPK-------------SRGS-LRVREHPILG-----PYVQDL 201 teveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntd + Vts+ ++ +l++ Gnk Rtva+T+mNe+SSRSHa+Fti+ +qr +d KIAA0706 202 SKLAVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRCHD 251 ttgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaa + ++ + +vsk++LVDLAGSERa+ +g A g RLkE+a KIAA0706 252 QLTGLDSE---------KVSKISLVDLAGSERADSSG---ARGMRLKEGA 289 nINkSLsaLGnVInALadnq....kssHiPYRDSKLTrLLQDSLGGGDNs nINkSL +LG+VI+ALad q++++ks++iPYRDS+LT+LL++ LGG Ns KIAA0706 290 NINKSLTTLGKVISALADMQskkrKSDFIPYRDSVLTWLLKENLGG--NS 337 KTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-* +T+MIa +SP++ nyeETLsTLr+A+R K+I+ KIAA0706 338 RTAMIAALSPADI----NYEETLSTLRYADRTKQIR 369 PF00498.16.fs: domain 1 of 1, from 543 to 610: score 42.0, E = 8.3e-12 *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf +++G d di l g++i +H++++ ++ +g + KIAA0706 543 TRVGQ----------VDMDIKLTGqFIREQHCLFRSIPQPDGEVVV- 578 rpaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<- +l++++++ t+vNgk + +ep +LksG++i +G KIAA0706 579 ----------TLEPCEGAE----TYVNGKLV--TEPLVLKSGNRIVMG 610 * KIAA0706 - - PF00498.16.ls: domain 1 of 1, from 543 to 610: score 43.7, E = 5.8e-10 *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf +++G d di l g++i +H++++ ++ +g + KIAA0706 543 TRVGQ----------VDMDIKLTGqFIREQHCLFRSIPQPDGEVVV- 578 rpaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<- +l++++++ t+vNgk + +ep +LksG++i +G KIAA0706 579 ----------TLEPCEGAE----TYVNGKLV--TEPLVLKSGNRIVMG 610 * KIAA0706 - - //