hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10122715/chunk_1/iprscan-20080502-10122715.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0687 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00036 437.8 5.7e-127 1 SM00220 280.7 1.1e-79 1 SM00219 12.5 6.5e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00219 1/1 1 252 [. 1 280 [] 12.5 6.5e-12 SM00220 1/1 1 252 [. 1 231 [] 280.7 1.1e-79 SM00036 1/1 857 1155 .. 1 375 [] 437.8 5.7e-127 Alignments of top-scoring domains: SM00219: domain 1 of 1, from 1 to 252: score 12.5, E = 6.5e-12 *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda..keeFlrEak +VykG+ ++++ A+K++ +++ee+ E++ KIAA0687 1 -------------QVYKGRHVktgQLAAIKVMDVTEdeEEEIKLEIN 34 iMkklGgkHpNiVkLlGvcteegrrFme....vePlmivmEymegGdLld ++kk+ +H Ni +G+ +++ ++++++++l++vmE++ G+ d KIAA0687 35 MLKKY-SHHRNIATYYGAFIKK-----SppghDDQLWLVMEFCGAGSITD 78 yLrknrpk.lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk +++++++l+ + +++ I +G ++L+ ++++HRD+ N+L++en KIAA0687 79 LVKNTKGNtLKEDWIAYISREILRGLAHLHIHHVIHRDIKGQNVLLTENA 128 vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEsl.. vK DFG s l+ + r + g+ WmAPE++ KIAA0687 129 EVKLVDFGVSAQLDRT--------VGRRNTFIGTP-----YWMAPEVIac 165 ...kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylk +++ d ++ SD WS G++ E+ G++P + m + ++l ++ KIAA0687 166 denPDATYDYRSDLWSCGITAIEMAE-GAPPLCD-----MHPMRALFLIP 209 kGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel..verl + p+P s +++ ++ ++ C + +RP+ ++l ++ ++ KIAA0687 210 RN---PPPRL----KSKKWSKKFFSFIEGCLVKNYMQRPSTEQLlkHPFI 252 <-* KIAA0687 - - SM00220: domain 1 of 1, from 1 to 252: score 280.7, E = 1.1e-79 *->YellkklGkGaFGkVylardkktgrlvAiKvik......erilrEik +Vy++r++ktg+l AiKv++ +++++e i+ Ei+ KIAA0687 1 -------------QVYKGRHVKTGQLAAIKVMDvtedeeEEIKLEIN 34 iLkk..dHPNIVkLydvfed.......dklylVmEyceGdlGdLfdllkk +Lkk ++H NI ++y++f +++++++d l+lVmE+c+ G+ dl k+ KIAA0687 35 MLKKysHHRNIATYYGAFIKksppghdDQLWLVMEFCGA--GSITDLVKN 82 rgrrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds.. +++ l E++++++ r+il++L++LH +++iHRD+K +N+LL+++ KIAA0687 83 TKGNT----LKEdWIAYISREILRGLAHLHIHHVIHRDIKGQNVLLTEna 128 hvKlaDFGlArql.......ttfvGTpeYmAPEvl........gYgkpav +vKl DFG+++ql+++ ++++tf+GTp++mAPEv+ +++++ Y++ ++ KIAA0687 129 EVKLVDFGVSAQLdrtvgrrNTFIGTPYWMAPEVIacdenpdaTYDY-RS 177 DiWSlGcilyElltGkpPFp..qldlifkkig............Speakd D WS+G++ +E++ G pP ++ ++++ + +i ++++++ +++++S+ + + KIAA0687 178 DLWSCGITAIEMAEGAPPLCdmHPMRALFLIPrnppprlkskkwSKKFFS 227 LikklLvkdPekRlta.eaLedeldikaHPff<-* +i+++Lvk+ +R++ +++L+ HPf+ KIAA0687 228 FIEGCLVKNYMQRPSTeQLLK-------HPFI 252 SM00036: domain 1 of 1, from 857 to 1155: score 437.8, E = 5.7e-127 *->naakwnhpitcdqLWGkiLLvgTeeGLYvlnisrqlnkdhegtlekl +++++n++i+c++LWG++LLvgTe+GL++l++s+q g++++l KIAA0687 857 YKKRFNSEILCAALWGVNLLVGTESGLMLLDRSGQ------GKVYPL 897 isrrsvtqiwvleennvLlmisGkkpqlyshpLsaltekkltqgntpiik i rr+++q++vle++nvL++isGkk++l++++Ls+l++k KIAA0687 898 INRRRFQQMDVLEGLNVLVTISGKKDKLRVYYLSWLRNK----------- 936 dalgsarlviRknvlttkipdvkGNchlcavkvngkrtgilflcaalqss l+++ v++k+++ t+++d++G c++++v v+++r i+fl+ al+ss KIAA0687 937 -ILHNDPEVEKKQGW-TTVGDLEG-CVHYKV-VKYER--IKFLVIALKSS 980 VvllaqwynplkkfklvksSNNiLNNEledikkflkklivplplfvelvs V+++a++++p++kf+ +ks ++++v+ pl+v+l++ KIAA0687 981 VEVYAWAPKPYHKFMAFKS----------------FGELVHKPLLVDLTV 1014 ssfelpkvciGsdkPVGGdaggdvvqfhqdphlNslkfkeslvskedlsl ++ +++kv++Gs+ g+++v+++ + s++d++l KIAA0687 1015 EEGQRLKVIYGSCA------GFHAVDVD-------------SGSVYDIYL 1045 pfaseetssddaTCkpisvvqvqasdgGqRdelLlcydefgvfVNlqGle p+++++++ kp+++++++++dg +elL+cy+++gv+VN++G KIAA0687 1046 PTHIQCSI------KPHAIIILPNTDG---MELLVCYEDEGVYVNTYG-- 1084 vrrsrkpiltwefmpesfayve.pyllafhsngieIrsiktgelNlqela r +++++l+w++mp+s+ay+++++++++++++ieIrs++tg+l +++++ KIAA0687 1085 -RITKDVVLQWGEMPTSVAYIRsNQTMGWGEKAIEIRSVETGHL-DGVFM 1132 drsiikarkiRlLgsCeisdrkIllsssp<-* ++ +a+++++L++ +++k++++s + KIAA0687 1133 HK---RAQRLKFLCE---RNDKVFFASVR 1155 //