hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10072008/chunk_1/iprscan-20080502-10072008.nocrc
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Query sequence: KIAA0684
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04564.6.fs U-box domain                                   157.1    3.1e-56   1
PF04564.6.ls U-box domain                                   159.0    1.2e-44   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04564.6.fs   1/1    1143  1216 ..     1    81 []   157.1  3.1e-56
PF04564.6.ls   1/1    1143  1216 ..     1    81 []   159.0  1.2e-44

Alignments of top-scoring domains:
PF04564.6.fs: domain 1 of 1, from 1143 to 1216: score 157.1, E = 3.1e-56
                   *->DiPDEFlDPItleLMkDPVilPSGkityDRstIerHLlsEAWGvdpt
                      D+PDEF+DP++++LM+DPV lPSG +++DRs+I+rHLl+     +pt
    KIAA0684  1143    DAPDEFRDPLMDTLMTDPVRLPSG-TIMDRSIILRHLLN-----SPT 1183 

                   DPftGRepLthdeLiPNleLKekIdawleekrea<-*
                   DPf+ R+ Lt+++L P +eLKe+I+aw++ek+++   
    KIAA0684  1184 DPFN-RQTLTESMLEPVPELKEQIQAWMREKQNS    1216 

PF04564.6.ls: domain 1 of 1, from 1143 to 1216: score 159.0, E = 1.2e-44
                   *->DiPDEFlDPItleLMkDPVilPSGkityDRstIerHLlsEAWGvdpt
                      D+PDEF+DP++++LM+DPV lPSG +++DRs+I+rHLl+     +pt
    KIAA0684  1143    DAPDEFRDPLMDTLMTDPVRLPSG-TIMDRSIILRHLLN-----SPT 1183 

                   DPftGRepLthdeLiPNleLKekIdawleekrea<-*
                   DPf+ R+ Lt+++L P +eLKe+I+aw++ek+++   
    KIAA0684  1184 DPFN-RQTLTESMLEPVPELKEQIQAWMREKQNS    1216 

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