hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09565709/chunk_1/iprscan-20080502-09565709.nocrc
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Query sequence: KIAA0678
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00226.21.fs DnaJ domain                                     69.9    3.5e-20   1
PF00226.21.ls DnaJ domain                                     71.7    2.2e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00226.21.fs   1/1    1315  1376 ..     1    76 []    69.9  3.5e-20
PF00226.21.ls   1/1    1315  1376 ..     1    76 []    71.7  2.2e-18

Alignments of top-scoring domains:
PF00226.21.fs: domain 1 of 1, from 1315 to 1376: score 69.9, E = 3.5e-20
                   *->dyYeiLGvpr...dAsdeeIKKAYRkLAlkyHPDKNpgdpeerktne
                      d Ye+L++p++++  +++ I+KAY +LA kyHPDKNp+         
    KIAA0678  1315    DAYEVLNLPQgqgPHDESKIRKAYFRLAQKYHPDKNPEGR------- 1354 

                   raeskeeAeekFkeineAYevLSDpekRaiYD<-*
                            ++F ++n+AYe L+ +   +i D   
    KIAA0678  1355 ---------DMFEKVNKAYEFLCTKSA-KIVD    1376 

PF00226.21.ls: domain 1 of 1, from 1315 to 1376: score 71.7, E = 2.2e-18
                   *->dyYeiLGvpr...dAsdeeIKKAYRkLAlkyHPDKNpgdpeerktne
                      d Ye+L++p++++  +++ I+KAY +LA kyHPDKNp+         
    KIAA0678  1315    DAYEVLNLPQgqgPHDESKIRKAYFRLAQKYHPDKNPEGR------- 1354 

                   raeskeeAeekFkeineAYevLSDpekRaiYD<-*
                            ++F ++n+AYe L+ +   +i D   
    KIAA0678  1355 ---------DMFEKVNKAYEFLCTKSA-KIVD    1376 

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