# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ef02254.fasta.huge -Q ../query/KIAA0678.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0678, 2257 aa
 vs ./tmplib.23663 library

1985248 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.2131+/-0.00474; mu= 22.5858+/- 0.323
 mean_var=83.5198+/-19.436, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.140339

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 43, opt: 31, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0962  ( 822 res)   hj05850s1                   ( 822)  134 38.5  0.0098


>>KIAA0962  ( 822 res)   hj05850s1                        (822 aa)
 initn:  84 init1:  84 opt: 134  Z-score: 141.0  bits: 38.5 E(): 0.0098
Smith-Waterman score: 134;  39.344% identity (70.492% similar) in 61 aa overlap (1315-1373:69-126)

         1290      1300      1310      1320      1330      1340    
KIAA06 PIKDPVKLLKDTLDAWKKEVEKKPPMMSIDDAYEVLNLPQGQGPHDESKIRKAYFRLAQK
                                     : :.::.. .  .  :   :.::: .::..
KIAA09 REMEVRKLSISWQFLIVLVLILQILSALDFDPYRVLGVSRTASQAD---IKKAYKKLARE
       40        50        60        70        80           90     

         1350        1360      1370      1380      1390      1400  
KIAA06 YHPDKN--PEGRDMFEKVNKAYEFLCTKSAKIVDGPDPENIILILKTQSILFNRHKEDLQ
       .:::::  : ..: : ...::::.: ..  .                             
KIAA09 WHPDKNKDPGAEDKFIQISKAYEILSNEEKRSNYDQYGDAGENQGYQKQQQQREYRFRHF
         100       110       120       130       140       150     

           1410      1420      1430      1440      1450      1460  
KIAA06 PYKYAGYPMLIRTITMETSDDLLFSKESPLLPAATELAFHTVNCSALNAEELRRENGLEV
                                                                   
KIAA09 HENFYFDESFFHFPFNSERRDSIDEKYLLHFSHYVNEVVPDSFKKPYLIKITSDWCFSCI
         160       170       180       190       200       210     




2257 residues in 1 query   sequences
1985248 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:11:46 2008 done: Thu Dec 18 15:11:47 2008
 Total Scan time:  1.070 Total Display time:  0.040

Function used was FASTA [version 34.26.5 April 26, 2007]