HUGE

Gene/Protein Characteristic Table for KIAA0678

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04808
Accession No. :	AB014578
Description :	DnaJ homolog subfamily C member 13.
HUGO Gene Name :	DnaJ (Hsp40) homolog, subfamily C, member 13 (DNAJC13)
Clone Name :	ef02254 [Vector Info]
Source :
Note :	We replaced hk02710, former representative clones for KIAA0678 with ef02254. (2005/08/06)

Features of the cloned DNA sequence	Description

Length: 7595 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 749 bp

Genome contig ID gi89161205f_133519194
PolyA signal sequence
(AATAAA,-31)
+----*----+----*----+----*----+----
TAAAAATAAAGGGAATTGACTGCTTTGTTAATGAG
Flanking genome sequence
(221373 - 221422)
----+----*----+----*----+----*----+----*----+----*
ATATATTTGTTCTAGTTTAATCTTTCCGTTTGAAGACCTCATATATCTAT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 3 f 133619194 133740565 56 99.9 Perfect prediction

Features of the protein sequence	Description

Length: 2257 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
XP_516755	99.7	DnaJ (Hsp40) ho...	Pan troglodytes
AAI51247	100.0	DnaJ (Hsp40) ho...	Homo sapiens
O75165	99.9	DnaJ homolog su...	Homo sapiens
AAV41096	99.9	DnaJ domain-con...	Homo sapiens
XP_001115526	99.5	similar to DnaJ...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR001623 1315 1376 PF00226 Heat shock protein DnaJ

HMMSmart IPR001623 1314 1372 SM00271 Heat shock protein DnaJ

ProfileScan IPR001623 1315 1372 PS50076 Heat shock protein DnaJ

ScanRegExp IPR001412 2224 2235 PS00178 Aminoacyl-tRNA synthetase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001623	1315	1376	PF00226	Heat shock protein DnaJ
HMMSmart	IPR001623	1314	1372	SM00271	Heat shock protein DnaJ
ProfileScan	IPR001623	1315	1372	PS50076	Heat shock protein DnaJ
ScanRegExp	IPR001412	2224	2235	PS00178	Aminoacyl-tRNA synthetase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 1990 GELAVGGVFLRIFIAQPAWVL 2010 PRIMARY 21

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1990	GELAVGGVFLRIFIAQPAWVL	2010	PRIMARY	21

Expression profile	Description

: RT-PCR Description

Experimental conditions

Primer_f
: AGCATGACTGTAGGGTTGAGC

Primer_r
: AGGTTAATGATTGAGGATGCC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RH mapping information	Description

Chromosome No.

: 3

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: AGCATGACTGTAGGGTTGAGC
Primer_r	: AGGTTAATGATTGAGGATGCC
PCR product length	: 173 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	749 bp
Genome contig ID	gi89161205f_133519194
PolyA signal sequence (AATAAA,-31)	+--------+--------+----*----+---- TAAAAATAAAGGGAATTGACTGCTTTGTTAATGAG
Flanking genome sequence (221373 - 221422)	----+--------+--------+--------+--------+----* ATATATTTGTTCTAGTTTAATCTTTCCGTTTGAAGACCTCATATATCTAT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	3	f	133619194	133740565	56	99.9	Perfect prediction

Gene/Protein Characteristic Table for KIAA0678

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information