hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09533235/chunk_1/iprscan-20080502-09533235.nocrc
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Query sequence: KIAA0676
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00164                                                 202.1    5.3e-56   1
SM00568                                                 197.8    9.7e-55   2

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00568     1/2     154   221 ..     1    80 []   106.6  2.8e-27
SM00568     2/2     300   368 ..     1    80 []    91.2  1.2e-22
SM00164     1/1     517   730 ..     1   310 []   202.1  5.3e-56

Alignments of top-scoring domains:
SM00568: domain 1 of 2, from 154 to 221: score 106.6, E = 2.8e-27
                   *->ekFrklFkLpeeEkLiadcekeVtysCyLsttgdipvqGrlyiSnnr
                       k+rk+F++pe+EkL+++      ysC ++++ ++p+qG+ly++ n+
    KIAA0676   154    LKMRKQFGMPEGEKLVNY------YSCSYWKG-RVPRQGWLYLTVNH 193  

                   lcFrSnlfgkltppqyykvviPLadItrieKst<-*
                   lcF+S+l+gk++     ++v++++dItr+eK +   
    KIAA0676   194 LCFYSFLLGKEV-----SLVVQWVDITRLEKNA    221  

SM00568: domain 2 of 2, from 300 to 368: score 91.2, E = 1.2e-22
                   *->ekFrklFkLpeeEkLiadcekeVtysCyLsttg.dipvqGrlyiSnn
                      e++r +F+Lp +E+L+++      +sC+L+t++++++++G+++iSnn
    KIAA0676   300    ECYRATFRLPRDERLDGH------TSCTLWTPFnKLHIPGQMFISNN 340  

                   rlcFrSnlfgkltppqyykvviPLadItrieKst<-*
                   ++cF S ++ + +     +++iPL+++t +eK     
    KIAA0676   341 YICFAS-KEEDAC-----HLIIPLREVTIVEKAD    368  

SM00164: domain 1 of 1, from 517 to 730: score 202.1, E = 5.3e-56
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd
                      v kG+p+slRge+W l+++a+ +                      + 
    KIAA0676   517    VLKGIPESLRGELWLLFSGAWNE----------------------MV 541  

                   rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl
                   + +++Y +l ++  +k + ++                             
    KIAA0676   542 THPGYYAELVEKSTGKYSLAT----------------------------- 562  

                   dqIekDlkRtfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYsl
                     Ie+Dl+R +pe++ Fq++                g+ +LrrvL+aY+ 
    KIAA0676   563 EEIERDLHRSMPEHPAFQNE---------------LGIAALRRVLTAYAF 597  

                   ynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflfk
                   +np   +gYcQ mn ++++LLl+    +Ee+AFw++v+L+er+lp ++  
    KIAA0676   598 RNPT--IGYCQAMNIVTSVLLLYG---SEEEAFWLLVALCERMLPDYY-- 640  

                   dtnnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqskkkhvdkl
                              g+  dq  ++ l ++ lP+L++++q++            
    KIAA0676   641 ------NTRVVGALVDQGIFEELTRDFLPQLSEKMQDL------------ 672  

                   eidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkiala
                       s+ +l+WfLtlF + +P+e ++ i D++f+e    g ++++++ala
    KIAA0676   673 -GVISSISLSWFLTLFLSVMPFESAVVIVDCFFYE----GIKVILQVALA 717  

                   iLklnedkllkld<-*
                   +L+ n ++ll +    
    KIAA0676   718 VLDANMEQLLGCS    730  

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