hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09533235/chunk_1/iprscan-20080502-09533235.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0676 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00566.9.ls TBC domain 237.3 3e-68 1 PF00566.9.fs TBC domain 235.5 1.1e-67 1 PF02893.10.ls GRAM domain 207.2 3.4e-59 2 PF02893.10.fs GRAM domain 203.6 4.2e-58 2 PF00036.22.fs EF hand 24.1 1.6e-05 1 PF00036.22.ls EF hand 26.1 0.00012 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02893.10.fs 1/2 154 221 .. 1 82 [] 104.0 2.5e-28 PF02893.10.ls 1/2 154 221 .. 1 82 [] 105.8 1.2e-28 PF02893.10.ls 2/2 300 368 .. 1 82 [] 101.5 2.4e-27 PF02893.10.fs 2/2 300 368 .. 1 82 [] 99.7 4e-27 PF00566.9.ls 1/1 517 729 .. 1 219 [] 237.3 3e-68 PF00566.9.fs 1/1 517 729 .. 1 219 [] 235.5 1.1e-67 PF00036.22.fs 1/1 895 923 .. 1 29 [] 24.1 1.6e-05 PF00036.22.ls 1/1 895 923 .. 1 29 [] 26.1 0.00012 Alignments of top-scoring domains: PF02893.10.fs: domain 1 of 2, from 154 to 221: score 104.0, E = 2.5e-28 *->ekfrkiFkeilppeEkLiadckaeVysCplqrpfskipvqGrlYltn +k+rk+F+ +p++EkL+++ ysC ++++ ++p+qG+lYlt KIAA0676 154 LKMRKQFG--MPEGEKLVNY-----YSCSYWKG--RVPRQGWLYLTV 191 nrlcFrSdklgdltkegvyklviPladiervekes<-* n+lcF+S++lg ++ +lv+ ++di+r+ek+ KIAA0676 192 NHLCFYSFLLGKEV-----SLVVQWVDITRLEKNA 221 PF02893.10.ls: domain 1 of 2, from 154 to 221: score 105.8, E = 1.2e-28 *->ekfrkiFkeilppeEkLiadckaeVysCplqrpfskipvqGrlYltn +k+rk+F+ +p++EkL+++ ysC ++++ ++p+qG+lYlt KIAA0676 154 LKMRKQFG--MPEGEKLVNY-----YSCSYWKG--RVPRQGWLYLTV 191 nrlcFrSdklgdltkegvyklviPladiervekes<-* n+lcF+S++lg ++ +lv+ ++di+r+ek+ KIAA0676 192 NHLCFYSFLLGKEV-----SLVVQWVDITRLEKNA 221 PF02893.10.ls: domain 2 of 2, from 300 to 368: score 101.5, E = 2.4e-27 *->ekfrkiFkeilppeEkLiadckaeVysCplqrpfskipvqGrlYltn e++r++F+ lp++E+L+++ +sC+l++pf+k++ +G+++++n KIAA0676 300 ECYRATFR--LPRDERLDGH-----TSCTLWTPFNKLHIPGQMFISN 339 nrlcFrSdklgdltkegvyklviPladiervekes<-* n++cF+S k+ d + +l+iPl++++ vek + KIAA0676 340 NYICFAS-KEEDAC-----HLIIPLREVTIVEKAD 368 PF02893.10.fs: domain 2 of 2, from 300 to 368: score 99.7, E = 4e-27 *->ekfrkiFkeilppeEkLiadckaeVysCplqrpfskipvqGrlYltn e++r++F+ lp++E+L+++ +sC+l++pf+k++ +G+++++n KIAA0676 300 ECYRATFR--LPRDERLDGH-----TSCTLWTPFNKLHIPGQMFISN 339 nrlcFrSdklgdltkegvyklviPladiervekes<-* n++cF+S k+ d + +l+iPl++++ vek + KIAA0676 340 NYICFAS-KEEDAC-----HLIIPLREVTIVEKAD 368 PF00566.9.ls: domain 1 of 1, from 517 to 729: score 237.3, E = 3e-68 *->vkeGvpsstrakVWavcsgAyqlrYAsageYerllrrgdekesqavd v G p s r++ W++ sgA +g+Y +l+ + +k s a + KIAA0676 517 VLKGIPESLRGELWLLFSGAWNEMVTHPGYYAELVEKSTGKYSLATE 563 kIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGMNV +Ie+D+ R++++ aFq + gi LrrvL+AY +nP +gYcQ+MN+ KIAA0676 564 EIERDLHRSMPEHPAFQNE---LGIAALRRVLTAYAFRNPTIGYCQAMNI 610 vaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDqkvLdsfv v + +Ll SEe+AF++L L+e +P Yy G + Dq +++ KIAA0676 611 VTSVLLLYG-SEEEAFWLLVALCERMLPD-YYNTRVVGALVDQGIFEELT 658 eellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIfDiLFadG + lp+L e + +gv + +sL wfL+L+ +P e A+ I D +F +G KIAA0676 659 RDFLPQLSEKMQDLGV-ISSISLSWFLTLFLSVMPFESAVVIVDCFFYEG 707 ivllfrvaLAvLkilkeqiLda<-* i + ++vaLAvL + eq+L + KIAA0676 708 IKVILQVALAVLDANMEQLLGC 729 PF00566.9.fs: domain 1 of 1, from 517 to 729: score 235.5, E = 1.1e-67 *->vkeGvpsstrakVWavcsgAyqlrYAsageYerllrrgdekesqavd v G p s r++ W++ sgA +g+Y +l+ + +k s a + KIAA0676 517 VLKGIPESLRGELWLLFSGAWNEMVTHPGYYAELVEKSTGKYSLATE 563 kIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGMNV +Ie+D+ R++++ aFq + gi LrrvL+AY +nP +gYcQ+MN+ KIAA0676 564 EIERDLHRSMPEHPAFQNE---LGIAALRRVLTAYAFRNPTIGYCQAMNI 610 vaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDqkvLdsfv v + +Ll SEe+AF++L L+e +P Yy G + Dq +++ KIAA0676 611 VTSVLLLYG-SEEEAFWLLVALCERMLPD-YYNTRVVGALVDQGIFEELT 658 eellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIfDiLFadG + lp+L e + +gv + +sL wfL+L+ +P e A+ I D +F +G KIAA0676 659 RDFLPQLSEKMQDLGV-ISSISLSWFLTLFLSVMPFESAVVIVDCFFYEG 707 ivllfrvaLAvLkilkeqiLda<-* i + ++vaLAvL + eq+L + KIAA0676 708 IKVILQVALAVLDANMEQLLGC 729 PF00036.22.fs: domain 1 of 1, from 895 to 923: score 24.1, E = 1.6e-05 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* + ++F+++D ++D I+f+Ef+++++ + KIAA0676 895 LAGRMFRLLDENKDSLINFKEFVTGMSGM 923 PF00036.22.ls: domain 1 of 1, from 895 to 923: score 26.1, E = 0.00012 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* + ++F+++D ++D I+f+Ef+++++ + KIAA0676 895 LAGRMFRLLDENKDSLINFKEFVTGMSGM 923 //