hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09463702/chunk_1/iprscan-20080502-09463702.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0672 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00721 257.7 9.1e-73 1 SM00324 235.9 3.4e-66 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00721 1/1 6 248 .. 1 260 [] 257.7 9.1e-73 SM00324 1/1 272 448 .. 1 193 [] 235.9 3.4e-66 Alignments of top-scoring domains: SM00721: domain 1 of 1, from 6 to 248: score 257.7, E = 9.1e-73 *->glkKaAffnRakqkvgeKvGkaekTkvLDedFeelerrfdtteaete +kK+ fnR+ q+++++vG+aekT+vL+ed ++ e+r++ +++ + KIAA0672 6 TMKKQ--FNRMRQLANQTVGRAEKTEVLSEDLLQVEKRLELVKQVSH 50 klqkdtkeylQpnrpalraklasqkklskslgevyeggyPqaeelLaeam + +k+++ +lQ++ + + a ++s+k++ ++l +++++ KIAA0672 51 STHKKLTACLQGQ-QGAEADKRSKKLPLTTLAQCLME------------- 86 idageglgadsslygkaldklgealkkllqakeslddqvkqtfilpllnf g+ + d++l+gk+l ++ge++ kl+q++++++ qv++++i+pl + KIAA0672 87 ---GSAILGDDTLLGKMLKLCGETEDKLAQELIHFELQVERDVIEPLFLL 133 llkefkeikkarkKlerkrLDyDsartklkkakkkkekkkkdeaklak.. ++e+++i+k+rk+l +++LD+Ds+rt++++ k+++ +++ +++ ak + KIAA0672 134 AEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQTSKSSGLSSSLQPAGAKad 183 .aeEelreAkqefEelneqLveeLpqlidsrvdffvnslqalieaqlryh ++Ee++eA + E +++qL+ ++++++++++d + n +q+lie q++yh KIAA0672 184 aLREEMEEAANRVEICRDQLSADMYSFVAKEID-YANYFQTLIEVQAEYH 232 resykllqqlqqqldk<-* r+s++llq +++q++ KIAA0672 233 RKSLTLLQAVLPQIKA 248 SM00324: domain 1 of 1, from 272 to 448: score 235.9, E = 3.4e-66 *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged. ++i +e C+ l ++G+++eG++Rv +s+s++k+L++a+d+ ++ KIAA0672 272 REIAFPIEACVTMLLECGMQEEGLFRVAPSASKLKKLKAALDCCVVd 318 dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie + + ++d+h++Ag+LK+yLReLPePL+tfely+e+i+ KIAA0672 319 V-------------QEYSADPHAIAGALKSYLRELPEPLMTFELYDEWIQ 355 aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL a+++ ++ +++l+al +++++LP+an++ ryL+++L KIAA0672 356 ASNV--------------QEQDKKLQALWNACEKLPKANHNNIRYLIkFL 391 nrVaehsevNkMtarNLAivFgPtLlrpp.........ltdikhqnkvve ++++e+ +vNkMt++N+Aiv+gP+Ll+p+ +++ ++ t + ++ ++e KIAA0672 392 SKLSEYQDVNKMTPSNMAIVLGPNLLWPQaegnitemmTTVSLQIVGIIE 441 tlienad<-* ++i++ad KIAA0672 442 PIIQHAD 448 //