hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09162454/chunk_1/iprscan-20080502-09162454.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0655 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01608.8.ls I/LWEQ domain 434.4 1.4e-127 1 PF01608.8.fs I/LWEQ domain 432.6 5e-127 1 PF07651.6.ls ANTH domain 382.3 6.9e-112 1 PF07651.6.fs ANTH domain 380.5 2.4e-111 1 PF01417.11.ls ENTH domain 120.6 4.1e-33 1 PF01417.11.fs ENTH domain 118.8 1.2e-32 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07651.6.fs 1/1 43 315 .. 1 301 [] 380.5 2.4e-111 PF01417.11.fs 1/1 43 162 .. 1 140 [] 118.8 1.2e-32 PF07651.6.ls 1/1 43 315 .. 1 301 [] 382.3 6.9e-112 PF01417.11.ls 1/1 43 162 .. 1 140 [] 120.6 4.1e-33 PF01608.8.ls 1/1 834 1027 .. 1 202 [] 434.4 1.4e-127 PF01608.8.fs 1/1 834 1027 .. 1 202 [] 432.6 5e-127 Alignments of top-scoring domains: PF07651.6.fs: domain 1 of 1, from 43 to 315: score 380.5, E = 2.4e-111 *->dsdLevAVvKATshedevPpKekhvreIlvtTssnspakvaacfwal d++++++++KA+++ +e+P+Kekh+r+I+++T++ +k a++fw++ KIAA0655 43 DKTQAISISKAINT-QEAPVKEKHARRIILGTHH---EKGAFTFWSY 85 srRlpltrnwvValKaLiliHklLreGhpsvlqellrarrrissllriss ++ lpl+++ ++ +K+++++Hk+Lr+Ghp+vl++++r+r i++++++++ KIAA0655 86 AIGLPLPSSSILSWKFCHVLHKVLRDGHPNVLHDCQRYRSNIREIGDLWG 135 RftfrddsssltwdygafiRaYakYLdeRlefhrklpvdpGtferveygt +l+++yg++++ Y k+L+++++fh k+p +p +e+ +++ KIAA0655 136 ---------HLHDRYGQLVNVYTKLLLTKISFHLKHPQFPAGLEVTDEVL 176 stakkslvavddpnerNNYyeltmsmedlLdkipkLQklldrllkckptg ++ a+ d n+ ++lt++m+d++d+ +kL + ++r l++ + + KIAA0655 177 -----EKAAGTDVNNI---FQLTVEMFDYMDCELKLSESVFRQLNTAIAV 218 nals.neciiaAlillikEsfglYkainegiinLlekffedklskhdAda +++s+++c++a+li++i+++++lY+++++++++L+++++ d+ KIAA0655 219 SQMSsGQCRLAPLIQVIQDCSHLYHYTVKLLFKLHSCLPA--------DT 260 aldiykrfskQferLkeFyevCkslgylrsletIPkLphiPpnllealee ++++++rf++Qf+ L++F+++++++ y+++l++IP+Lp+ Ppn+l+a+ + KIAA0655 261 LQGHRDRFHEQFHSLRNFFRRASDMLYFKRLIQIPRLPEGPPNFLRASAL 310 ylrdp<-* ++++ KIAA0655 311 AEHIK 315 PF01417.11.fs: domain 1 of 1, from 43 to 162: score 118.8, E = 1.2e-32 *->yseaeikVreATnnDpwGP.sgklmaeIaeaTyneklyvefeeimsv +++++i++++A+n+++ +P ++k+ ++I+ +T++ek++++f+++++ KIAA0655 43 DKTQAISISKAINTQE-APvKEKHARRIILGTHHEKGAFTFWSYAIG 88 LwkRLnkddknegknWRhVYKaLtlLeYLlknGSErvvddcreniyHkfn L+ + +++++ ++K++++L+++l++G+++v++dc+++++ n KIAA0655 89 LP---L------PSSSILSWKFCHVLHKVLRDGHPNVLHDCQRYRS---N 126 IrtLedFqyVfiDenGkmlrfDqGinVRkKAkelleLLnDderL<-* Ir++ D +G+ l +++G+ V+ ++k+ll++++++ ++ KIAA0655 127 IREIG-------DLWGH-LHDRYGQLVNVYTKLLLTKISFHLKH 162 PF07651.6.ls: domain 1 of 1, from 43 to 315: score 382.3, E = 6.9e-112 *->dsdLevAVvKATshedevPpKekhvreIlvtTssnspakvaacfwal d++++++++KA+++ +e+P+Kekh+r+I+++T++ +k a++fw++ KIAA0655 43 DKTQAISISKAINT-QEAPVKEKHARRIILGTHH---EKGAFTFWSY 85 srRlpltrnwvValKaLiliHklLreGhpsvlqellrarrrissllriss ++ lpl+++ ++ +K+++++Hk+Lr+Ghp+vl++++r+r i++++++++ KIAA0655 86 AIGLPLPSSSILSWKFCHVLHKVLRDGHPNVLHDCQRYRSNIREIGDLWG 135 RftfrddsssltwdygafiRaYakYLdeRlefhrklpvdpGtferveygt +l+++yg++++ Y k+L+++++fh k+p +p +e+ +++ KIAA0655 136 ---------HLHDRYGQLVNVYTKLLLTKISFHLKHPQFPAGLEVTDEVL 176 stakkslvavddpnerNNYyeltmsmedlLdkipkLQklldrllkckptg ++ a+ d n+ ++lt++m+d++d+ +kL + ++r l++ + + KIAA0655 177 -----EKAAGTDVNNI---FQLTVEMFDYMDCELKLSESVFRQLNTAIAV 218 nals.neciiaAlillikEsfglYkainegiinLlekffedklskhdAda +++s+++c++a+li++i+++++lY+++++++++L+++++ d+ KIAA0655 219 SQMSsGQCRLAPLIQVIQDCSHLYHYTVKLLFKLHSCLPA--------DT 260 aldiykrfskQferLkeFyevCkslgylrsletIPkLphiPpnllealee ++++++rf++Qf+ L++F+++++++ y+++l++IP+Lp+ Ppn+l+a+ + KIAA0655 261 LQGHRDRFHEQFHSLRNFFRRASDMLYFKRLIQIPRLPEGPPNFLRASAL 310 ylrdp<-* ++++ KIAA0655 311 AEHIK 315 PF01417.11.ls: domain 1 of 1, from 43 to 162: score 120.6, E = 4.1e-33 *->yseaeikVreATnnDpwGP.sgklmaeIaeaTyneklyvefeeimsv +++++i++++A+n+++ +P ++k+ ++I+ +T++ek++++f+++++ KIAA0655 43 DKTQAISISKAINTQE-APvKEKHARRIILGTHHEKGAFTFWSYAIG 88 LwkRLnkddknegknWRhVYKaLtlLeYLlknGSErvvddcreniyHkfn L+ + +++++ ++K++++L+++l++G+++v++dc+++++ n KIAA0655 89 LP---L------PSSSILSWKFCHVLHKVLRDGHPNVLHDCQRYRS---N 126 IrtLedFqyVfiDenGkmlrfDqGinVRkKAkelleLLnDderL<-* Ir++ D +G+ l +++G+ V+ ++k+ll++++++ ++ KIAA0655 127 IREIG-------DLWGH-LHDRYGQLVNVYTKLLLTKISFHLKH 162 PF01608.8.ls: domain 1 of 1, from 834 to 1027: score 434.4, E = 1.4e-127 *->VnesILsaakaImkAiaaLVkAAsaaQrEivaqGrgsaspaefYkkn Vne+IL++++++mkAi+ LV++++++Q+Eiv++Grg+a+++efY+kn KIAA0655 834 VNERILNSCTDLMKAIRLLVTTSTSLQKEIVESGRGAATQQEFYAKN 880 srWTEGLISAAKaVgaAttvLvEAAdkvVtsEDnGkgsfEeLIVaakeVA srWTEGLISA+KaVg+++t+LvEAAdkvV ++g++EeLIV+++e+A KIAA0655 881 SRWTEGLISASKAVGWGATQLVEAADKVVL----HTGKYEELIVCSHEIA 926 ASTAQLVaASrVKAGDDkdSkaAldrLqaAakaVneAtanLVaaaksgai ASTAQLVaAS+VKA +k+S++ l+rLq+++++Vne++an+Va++ksg++ KIAA0655 927 ASTAQLVAASKVKA--NKHSPH-LSRLQECSRTVNERAANVVASTKSGQE 973 fdiedqqeedfsslslhglKaqEmEqQveiLkLEkeLeeARkkLaelRKq + ied++++dfs+lsl++lK+qEmE+Qv++L+LEk+Le++R++L+elRKq KIAA0655 974 Q-IEDRDTMDFSGLSLIKLKKQEMETQVRVLELEKTLEAERMRLGELRKQ 1022 hYela<-* hY+la KIAA0655 1023 HYVLA 1027 PF01608.8.fs: domain 1 of 1, from 834 to 1027: score 432.6, E = 5e-127 *->VnesILsaakaImkAiaaLVkAAsaaQrEivaqGrgsaspaefYkkn Vne+IL++++++mkAi+ LV++++++Q+Eiv++Grg+a+++efY+kn KIAA0655 834 VNERILNSCTDLMKAIRLLVTTSTSLQKEIVESGRGAATQQEFYAKN 880 srWTEGLISAAKaVgaAttvLvEAAdkvVtsEDnGkgsfEeLIVaakeVA srWTEGLISA+KaVg+++t+LvEAAdkvV ++g++EeLIV+++e+A KIAA0655 881 SRWTEGLISASKAVGWGATQLVEAADKVVL----HTGKYEELIVCSHEIA 926 ASTAQLVaASrVKAGDDkdSkaAldrLqaAakaVneAtanLVaaaksgai ASTAQLVaAS+VKA +k+S++ l+rLq+++++Vne++an+Va++ksg++ KIAA0655 927 ASTAQLVAASKVKA--NKHSPH-LSRLQECSRTVNERAANVVASTKSGQE 973 fdiedqqeedfsslslhglKaqEmEqQveiLkLEkeLeeARkkLaelRKq + ied++++dfs+lsl++lK+qEmE+Qv++L+LEk+Le++R++L+elRKq KIAA0655 974 Q-IEDRDTMDFSGLSLIKLKKQEMETQVRVLELEKTLEAERMRLGELRKQ 1022 hYela<-* hY+la KIAA0655 1023 HYVLA 1027 //