hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08375624/chunk_1/iprscan-20080502-08375624.nocrc
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Query sequence: KIAA0632
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00756 PPR: pentatricopeptide repeat domain            86.4      3e-23   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00756   1/5     201   235 ..     1    35 []    33.6  2.3e-07
TIGR00756   2/5     275   309 ..     1    35 []    21.5  0.00098
TIGR00756   3/5     310   346 ..     1    35 []     8.8     0.44
TIGR00756   4/5     548   582 ..     1    35 []     7.5     0.64
TIGR00756   5/5     615   649 ..     1    35 []    14.9    0.071

Alignments of top-scoring domains:
TIGR00756: domain 1 of 5, from 201 to 235: score 33.6, E = 2.3e-07
                   *->vtYntlidglckagrveeAlelfdeMkerGikPdv<-*
                        Y++li g+++ g +++A+ l+++Mk+r+++P+    
    KIAA0632   201    SNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSD    235  

TIGR00756: domain 2 of 5, from 275 to 309: score 21.5, E = 0.00098
                   *->vtYntlidglckagrveeAlelfdeMkerGikPdv<-*
                       tY +l++  +k  +++ +l++f+e++ +G+++++   
    KIAA0632   275    KTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTE    309  

TIGR00756: domain 3 of 5, from 310 to 346: score 8.8, E = 0.44
                   *->vtYntlidglckagrv..eeAlelfdeMkerGikPdv<-*
                      +t++ l+ g+ + ++ + + Al++++ M++ G++P+    
    KIAA0632   310    ETFSFLLMGCIQDKKTgfRYALQVWRLMLSLGLQPSR    346  

TIGR00756: domain 4 of 5, from 548 to 582: score 7.5, E = 0.64
                   *->vtYntlidglckagrveeAlelfdeMkerGikPdv<-*
                        +ntl++  +k g++e A++l+  + +rG++P+    
    KIAA0632   548    TFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNL    582  

TIGR00756: domain 5 of 5, from 615 to 649: score 14.9, E = 0.071
                   *->vtYntlidglckagrveeAlelfdeMkerGikPdv<-*
                      ++Y++li++  +  ++   ++++++Mk + + +++   
    KIAA0632   615    HIYSALINAAIRKLNYTYLISILKDMKQNRVPVNE    649  

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