hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08375624/chunk_1/iprscan-20080502-08375624.nocrc
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Query sequence: KIAA0632
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01535.11.fs PPR repeat                                      88.0    6.3e-25   7
PF01535.11.ls PPR repeat                                      83.7    5.3e-22   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01535.11.fs   2/7     201   235 ..     1    35 []    36.8    7e-10
PF01535.11.ls   1/4     201   235 ..     1    35 []    38.8  1.8e-08
PF01535.11.ls   2/4     275   309 ..     1    35 []    16.5    0.078
PF01535.11.fs   3/7     275   309 ..     1    35 []    14.5   0.0026
PF01535.11.fs   5/7     548   582 ..     1    35 []    12.1    0.012
PF01535.11.ls   3/4     548   582 ..     1    35 []    14.1     0.15
PF01535.11.ls   4/4     615   649 ..     1    35 []    14.3     0.14
PF01535.11.fs   7/7     615   649 ..     1    35 []    12.3    0.011

Alignments of top-scoring domains:
PF01535.11.fs: domain 2 of 7, from 201 to 235: score 36.8, E = 7e-10
                   *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-*
                      + Y++lI g+++ G l++A+ l+++Mk+++++P++   
    KIAA0632   201    SNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSD    235  

PF01535.11.ls: domain 1 of 4, from 201 to 235: score 38.8, E = 1.8e-08
                   *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-*
                      + Y++lI g+++ G l++A+ l+++Mk+++++P++   
    KIAA0632   201    SNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSD    235  

PF01535.11.ls: domain 2 of 4, from 275 to 309: score 16.5, E = 0.078
                   *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-*
                       tY +l++  +k  +l+++l++f+e++ kG++ ++   
    KIAA0632   275    KTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTE    309  

PF01535.11.fs: domain 3 of 7, from 275 to 309: score 14.5, E = 0.0026
                   *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-*
                       tY +l++  +k  +l+++l++f+e++ kG++ ++   
    KIAA0632   275    KTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTE    309  

PF01535.11.fs: domain 5 of 7, from 548 to 582: score 12.1, E = 0.012
                   *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-*
                        +ntl++  +k G+le A  l+  + ++G++P+    
    KIAA0632   548    TFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNL    582  

PF01535.11.ls: domain 3 of 4, from 548 to 582: score 14.1, E = 0.15
                   *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-*
                        +ntl++  +k G+le A  l+  + ++G++P+    
    KIAA0632   548    TFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNL    582  

PF01535.11.ls: domain 4 of 4, from 615 to 649: score 14.3, E = 0.14
                   *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-*
                        Y++lI++  ++ ++   ++++++Mk++ +  ++   
    KIAA0632   615    HIYSALINAAIRKLNYTYLISILKDMKQNRVPVNE    649  

PF01535.11.fs: domain 7 of 7, from 615 to 649: score 12.3, E = 0.011
                   *->vtYntlIsgycknGkleeAlelfeeMkekGikPdv<-*
                        Y++lI++  ++ ++   ++++++Mk++ +  ++   
    KIAA0632   615    HIYSALINAAIRKLNYTYLISILKDMKQNRVPVNE    649  

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