hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08220169/chunk_1/iprscan-20080502-08220169.nocrc
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Query sequence: KIAA0623
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 326.6    1.7e-93   1
SM00219                                                  91.4    1.1e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      73   335 ..     1   280 []    91.4  1.1e-22
SM00220    1/1      73   335 ..     1   231 []   326.6  1.7e-93

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 73 to 335: score 91.4, E = 1.1e-22
                   *->ltlgkkLGeGaFGeVykGtlk....ieVAVKtLkeda....keeFlr
                       ++ +  G+GaF +V++G+ +++++ eVA+K++++   ++++  + +
    KIAA0623    73    YSKRDLVGHGAFAVVFRGRHRqktdWEVAIKSINKKNlsksQILLGK 119  

                   EakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldy
                   E+ki+k+l  +H+NiV+L+ v   +         +++vmEy+ gGdL dy
    KIAA0623   120 EIKILKEL--QHENIVALYDVQELP-------NSVFLVMEYCNGGDLADY 160  

                   LrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk..
                   L++++  ls ++   f +QIA+ M+ L+sk+++HRDL   N+L++  +++
    KIAA0623   161 LQAKGT-LSEDTIRVFLHQIAAAMRILHSKGIIHRDLKPQNILLSYANrr 209  

                   .......vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWm
                   +++ ++ ++KI+DFG +R+l++         +  ++  ++         m
    KIAA0623   210 kssvsgiRIKIADFGFARYLHSN--------MMAATLCGSPM------YM 245  

                   APEslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevley
                   APE+++   +  k D WS G +++  +  G++P         s+++++ +
    KIAA0623   246 APEVIMSQHYDAKADLWSIGTVIY-QCLVGKPPFQA-----NSPQDLRMF 289  

                   lkkGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel..ve
                    +k + l++    +       ++ l +l l   +++ +dR  F++  ++ 
    KIAA0623   290 YEKNRSLMPSIPRE------TSPYLANLLLGLLQRNQKDRMDFEAFfsHP 333  

                   rl<-*
                   +l   
    KIAA0623   334 FL    335  

SM00220: domain 1 of 1, from 73 to 335: score 326.6, E = 1.7e-93
                   *->YellkklGkGaFGkVylardkk.tgrlvAiKvik........erilr
                      Y + +++G+GaF++V+++r++ +t+ +vAiK i++++ +++++ + +
    KIAA0623    73    YSKRDLVGHGAFAVVFRGRHRQkTDWEVAIKSINkknlsksqILLGK 119  

                   EikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrr
                   EikiLk+ +H+NIV Lydv e +++++lVmEyc+G  GdL d+l+ +g+ 
    KIAA0623   120 EIKILKElQHENIVALYDVQELpNSVFLVMEYCNG--GDLADYLQAKGT- 166  

                   glrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds......
                        lsE+++r +++Qi+ a+  LHs+gIiHRDLKP+NiLL+  +++++
    KIAA0623   167 -----LSEdTIRVFLHQIAAAMRILHSKGIIHRDLKPQNILLSYanrrks 211  

                   .....hvKlaDFGlArql......ttfvGTpeYmAPEvl...gYgkpavD
                   + ++ ++K+aDFG+Ar l+++    t++G+p YmAPEv+ +++Y+  ++D
    KIAA0623   212 svsgiRIKIADFGFARYLhsnmmaATLCGSPMYMAPEVImsqHYDA-KAD 260  

                   iWSlGcilyElltGkpPFp.....qldlifkkig..........Speakd
                    WS+G ++y +l+GkpPF+ +++++l + ++k ++  ++ ++++Sp + +
    KIAA0623   261 LWSIGTVIYQCLVGKPPFQanspqDLRMFYEKNRslmpsipretSPYLAN 310  

                   LikklLvkdPekRlta.eaLedeldikaHPff<-*
                   L+ +lL+++ ++R+  +  +        HPf+   
    KIAA0623   311 LLLGLLQRNQKDRMDFeAFFS-------HPFL    335  

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