hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08183639/chunk_1/iprscan-20080502-08183639.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0621 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00620.17.fs RhoGAP domain 150.2 4.9e-44 1 PF00620.17.ls RhoGAP domain 151.1 2.6e-42 1 PF00018.18.fs SH3 domain 50.8 4.1e-13 1 PF00169.19.fs PH domain 44.6 4.1e-13 1 PF00018.18.ls SH3 domain 52.7 1.1e-12 1 PF00169.19.ls PH domain 46.6 7.8e-11 1 PF07653.7.fs Variant SH3 domain 23.8 3.4e-06 1 PF07653.7.ls Variant SH3 domain 25.5 0.00018 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00169.19.fs 1/1 205 308 .. 1 92 [] 44.6 4.1e-13 PF00169.19.ls 1/1 205 308 .. 1 92 [] 46.6 7.8e-11 PF00620.17.ls 1/1 330 486 .. 1 155 [] 151.1 2.6e-42 PF00620.17.fs 1/1 330 486 .. 2 155 .] 150.2 4.9e-44 PF00018.18.fs 1/1 698 753 .] 1 59 [] 50.8 4.1e-13 PF00018.18.ls 1/1 698 753 .] 1 59 [] 52.7 1.1e-12 PF07653.7.ls 1/1 699 753 .] 1 69 [] 25.5 0.00018 PF07653.7.fs 1/1 699 753 .] 1 69 [] 23.8 3.4e-06 Alignments of top-scoring domains: PF00169.19.fs: domain 1 of 1, from 205 to 308: score 44.6, E = 4.1e-13 *->vikeGwLlkkg...gkkswkkRyfvLfd....dvLlyykdkk...kk ++eG+L+++++++++ sw k+y++ ++++++ +++ ++ k++++ KIAA0621 205 YTMEGYLYVQEkrhFGTSWVKHYCTYQRdskqITMVPFDQKSggkGG 251 pkgsipLsgiqvtkvpdnkrkncFeirt.dr.etlllqaeseeerkeWvk s+ L++++ +k++++++++cF + dr+ +++ qa see+r+ W++ KIAA0621 252 EDESVILKSCTRRKTDSIEKRFCFDVEAvDRpGVITMQALSEEDRRLWME 301 aiqsair<-* a+ KIAA0621 302 AMDGREP 308 PF00169.19.ls: domain 1 of 1, from 205 to 308: score 46.6, E = 7.8e-11 *->vikeGwLlkkg...gkkswkkRyfvLfd....dvLlyykdkk...kk ++eG+L+++++++++ sw k+y++ ++++++ +++ ++ k++++ KIAA0621 205 YTMEGYLYVQEkrhFGTSWVKHYCTYQRdskqITMVPFDQKSggkGG 251 pkgsipLsgiqvtkvpdnkrkncFeirt.dr.etlllqaeseeerkeWvk s+ L++++ +k++++++++cF + dr+ +++ qa see+r+ W++ KIAA0621 252 EDESVILKSCTRRKTDSIEKRFCFDVEAvDRpGVITMQALSEEDRRLWME 301 aiqsair<-* a+ KIAA0621 302 AMDGREP 308 PF00620.17.ls: domain 1 of 1, from 330 to 486: score 151.1, E = 2.6e-42 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdl. i++kCi ++e rG++++G+yR+ G sr+++L + + ++ KIAA0621 330 -SIIRKCIHAVETRGINEQGLYRIVGVNSRVQKLLSVLMDPKTASEt 375 ..ndleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeer ++ e + +++s+LK++LR LP PL+ +++ fi+ aak+e+ e r KIAA0621 376 etDICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIK-AAKLENQESR 424 lealrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPt +++++ l++ LP+ Nr+ L+ L+ hL++Va n+++N+Mt+ NL++vFgPt KIAA0621 425 VSEIHSLVHRLPEKNRQMLQLLMNHLANVANNHKQNLMTVANLGVVFGPT 474 Llrppdgd.sad<-* Llrp++++ a+ KIAA0621 475 LLRPQEETvAAI 486 PF00620.17.fs: domain 1 of 1, from 330 to 486: score 150.2, E = 4.9e-44 *->livekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdl.. i++kCi ++e rG++++G+yR+ G sr+++L + + +++ KIAA0621 330 SIIRKCIHAVETRGINEQGLYRIVGVNSRVQKLLSVLMDPKTASEte 376 .ndleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerl + e + +++s+LK++LR LP PL+ +++ fi+ aak+e+ e r+ KIAA0621 377 tDICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIK-AAKLENQESRV 425 ealrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtL ++++ l++ LP+ Nr+ L+ L+ hL++Va n+++N+Mt+ NL++vFgPtL KIAA0621 426 SEIHSLVHRLPEKNRQMLQLLMNHLANVANNHKQNLMTVANLGVVFGPTL 475 lrppdgd.sad<-* lrp++++ a+ KIAA0621 476 LRPQEETvAAI 486 PF00018.18.fs: domain 1 of 1, from 698 to 753: score 50.8, E = 4.1e-13 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk +k++ALY+ +a++++ELsF+ G v+ ++ s +pgW++g l+ Gk KIAA0621 698 RKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLN---GK 741 eGliPsNYVepv<-* +GliP NYVe KIAA0621 742 TGLIPENYVEFL 753 PF00018.18.ls: domain 1 of 1, from 698 to 753: score 52.7, E = 1.1e-12 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk +k++ALY+ +a++++ELsF+ G v+ ++ s +pgW++g l+ Gk KIAA0621 698 RKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLN---GK 741 eGliPsNYVepv<-* +GliP NYVe KIAA0621 742 TGLIPENYVEFL 753 PF07653.7.ls: domain 1 of 1, from 699 to 753: score 25.5, E = 0.00018 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.... +++a+ ++a + +e Ls+++G V+ + +++++ KIAA0621 699 KAKALYACKA-EHDSE------LSFTAGT---VF-----DNVHpsqe 730 .gwwegeslggGrrrRGlvPssaveel<-* +gw eg++ +G++ Gl+P ++ve l KIAA0621 731 pGWLEGTL--NGKT--GLIPENYVEFL 753 PF07653.7.fs: domain 1 of 1, from 699 to 753: score 23.8, E = 3.4e-06 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.... +++a+ ++a + +e Ls+++G V+ + +++++ KIAA0621 699 KAKALYACKA-EHDSE------LSFTAGT---VF-----DNVHpsqe 730 .gwwegeslggGrrrRGlvPssaveel<-* +gw eg++ +G++ Gl+P ++ve l KIAA0621 731 pGWLEGTL--NGKT--GLIPENYVEFL 753 //