hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan_v890/data/smart.HMMs
Sequence file:            /cdna/full/goal/hg/hg03834/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  hg03834  786

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CULLIN   Cullin                                         315.9    2.9e-90   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CULLIN     1/1     431   581 ..     1   159 []   315.9  2.9e-90

Alignments of top-scoring domains:
CULLIN: domain 1 of 1, from 431 to 581: score 315.9, E = 2.9e-90
                   *->dkvlvlFkYiedKDVFekyYkkhLAKRLllnrSaSdDaEenmitkLK
                      dk++vlF+++++KDVFe+yYk+hLA+RLl+n+S+SdD+E+nmi+kLK
     hg03834   431    DKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLK 477  

                   qecGyPaefTsKLegMFrDislSkdltqsFkdylannpgnaskksiDlsn
                   +ecG+  +fTsKLegMFrD+s+S++++++F+++l++++  +s +++Dl+ 
     hg03834   478 TECGC--QFTSKLEGMFRDMSISNTTMDEFRQHLQATG--VSLGGVDLT- 522  

                   vrVLtsgyWPtystekikveinLPqeLskaleeFeeFYlakhsGRkLtWl
                   vrVLt+gyWPt+s++   +++n+P+ +++a+e+F++FYlakhsGR+Lt +
     hg03834   523 VRVLTTGYWPTQSAT---PKCNIPPAPRHAFEIFRRFYLAKHSGRQLTLQ 569  

                   hslgsgevkanf<-*
                   h++gs++++a+f   
     hg03834   570 HHMGSADLNATF    581  

//