hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan_v890/data/Pfam
Sequence file:            /cdna/full/goal/hg/hg03834/w3open/interpro/cnk_1/seq.in
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Query:  hg03834  786

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Cullin   Cullin family                                 1023.3   5.5e-304   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Cullin     1/1      52   684 ..     1   656 []  1023.3 5.5e-304

Alignments of top-scoring domains:
Cullin: domain 1 of 1, from 52 to 684: score 1023.3, E = 5.5e-304
                   *->WekLrdaidkiltnlknfsslsymeLYtaVYnmCtstsavphklgek
                      W++L++ai+ i+  +kn+s+ls++eLY+++Y+m      v+hk+gek
     hg03834    52    WDLLKNAIQEIQ--RKNNSGLSFEELYRNAYTM------VLHKHGEK 90   

                   LYnrLkeyleeyvka.lrkslleisddenlLkeyikeWkdfttsmkmind
                   LY++L+e+++e++++++r+ +l++  + n+L+++++ W+d++t+m+mi+d
     hg03834    91 LYTGLREVVTEHLINkVREDVLNS-LNNNFLQTLNQAWNDHQTAMVMIRD 139  

                   ifmYLdRyyvkrnidgkkevyeiyeLgLdiWrellfdn..ikdrlidalL
                   i+mY+dR+yv++n     +v+++y+LgL+i+r+++++++ i+d+l+++lL
     hg03834   140 ILMYMDRVYVQQN-----NVENVYNLGLIIFRDQVVRYgcIRDHLRQTLL 184  

                   elIekeRlGeaidr.liknvidmlvsLgldekDmkkqklevYkedFEkpF
                   ++I +eR+Ge +dr+ i+n+++ml+ Lgl+        ++vY+edFE+pF
     hg03834   185 DMIARERKGEVVDRgAIRNACQMLMILGLE-------GRSVYEEDFEAPF 227  

                   LeaTseFYkkesskfLqensvseYmkkvEkrLeeEeeRvrlYLhsstekk
                   Le++ eF++ es+kfL+ens+s Y+kkvE+r++eE eRv ++L++ste++
     hg03834   228 LEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEP 277  

                   LievvekvLIekHletLl.mehsefq.LldnnkieDLrrMYrLlsRvpnG
                   +++vve++LI+kH++t+++me+s+++++l+n k+eDL++MY+L+sRvpnG
     hg03834   278 IVKVVERELISKHMKTIVeMENSGLVhMLKNGKTEDLGCMYKLFSRVPNG 327  

                   LeplrkilekhvkkeGlaavsklaaetdpkdyVeeLLelhdkydslvnea
                   L++++++++++++++G+a+vs++ ++++p+dy++ LL+l+ ++d+++ e+
     hg03834   328 LKTMCECMSSYLREQGKALVSEEGEGKNPVDYIQGLLDLKSRFDRFLLES 377  

                   FnnDplFlnaLdkAfesfiNsnvvtkrskspELLAkYcDdlLKKgsKgle
                   FnnD+lF++++  +fe+f+N+n     s+spE+L++++Dd+LKKg Kgl+
     hg03834   378 FNNDRLFKQTIAGDFEYFLNLN-----SRSPEYLSLFIDDKLKKGVKGLT 422  

                   eeeleekldkiivlfkyiedKDvFekfYrkmLAkRLLngkSasLddaEkr
                   e+e+e++ldk++vlf++ ++KDvFe++Y+++LA+RLL +kS+s dd+Ek+
     hg03834   423 EQEVETILDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVS-DDSEKN 471  

                   miskLKqvecGyefTsKLegMfkDislSkelnnsFknhlennndnldlkl
                   miskLK+ ecG++fTsKLegMf+D+s+S + +++F++hl++++ +l    
     hg03834   472 MISKLKT-ECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQATGVSLG--- 517  

                   edeeneEgidlsvlvLstgfWPtlp.epsinfnLPeelekalerFeefYl
                          g+dl+v+vL+tg+WPt++ +p+  +n+P+  + a+e+F+ fYl
     hg03834   518 -------GVDLTVRVLTTGYWPTQSaTPK--CNIPPAPRHAFEIFRRFYL 558  

                   kkhsgpdRkLtWlhsLGkgelkaefndgtk...................s
                   +khsg  R+Lt++h++G+++l+a+f+++ k++++++ + ++ + ++++++
     hg03834   559 AKHSG--RQLTLQHHMGSADLNATFYGPVKkedgsevgvggaqvtgsntR 606  

                   kyeltVstyQmavLLlFNdkeeltyeelqeatqipddeLrrtLqsLlkak
                   k++l+Vst+Qm++L+lFN++e++t+ee+q++t+ip+ eL+r+LqsL+++k
     hg03834   607 KHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGK 656  

                   vllllllryetigekspkdkeispntkfslNsdft<-*
                     +++l        k+pk+kei+++ +f +N++ft   
     hg03834   657 PTQRVLT-------KEPKSKEIENGHIFTVNDQFT    684  

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