hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08041714/chunk_1/iprscan-20080502-08041714.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0613 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00132 225.0 6.4e-63 3 SM00228 70.4 2.2e-16 1 SM00735 44.4 1.5e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00228 1/1 18 91 .. 1 80 [] 70.4 2.2e-16 SM00735 1/1 196 221 .. 1 26 [] 44.4 1.5e-08 SM00132 1/3 557 608 .. 1 52 [] 71.6 9.5e-17 SM00132 2/3 616 667 .. 1 52 [] 79.2 5.1e-19 SM00132 3/3 675 728 .. 1 52 [] 74.2 1.6e-17 Alignments of top-scoring domains: SM00228: domain 1 of 1, from 18 to 91: score 70.4, E = 2.2e-16 *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle g++Gf+++g+++ + ++ +s++ pGs Aa++ L GD +++ KIAA0613 18 GPWGFRLQGgkdfnmPLTISRITPGSKAAQSQ------LSQGDLVVA 58 VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* ++G ++++++th+ea++ +k+a+ ++Lt+++ + KIAA0613 59 IDG-VNTDTMTHLEAQNKIKSASY-----NLSLTLQKSK 91 SM00735: domain 1 of 1, from 196 to 221: score 44.4, E = 1.5e-08 *->rvvhkQYNsPiGLYSseniaetlqgq<-* +++++QYN+PiGLYS+e+++e++q++ KIAA0613 196 SSQPRQYNNPIGLYSAETLREMAQMY 221 SM00132: domain 1 of 3, from 557 to 608: score 71.6, E = 9.5e-17 *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg.tffekdgk C++C+ I+g l+a+g++wHpe F+C+ Ck++L++ f+e+ ++ KIAA0613 557 LCGHCNNVIRG-PFLVAMGRSWHPEEFTCAYCKTSLADvCFVEEQNN 602 lyCkdc<-* +yC++c KIAA0613 603 VYCERC 608 SM00132: domain 2 of 3, from 616 to 667: score 79.2, E = 5.1e-19 *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg.tffekdgk Ca+C+ +I+g ev++al ++wH CF+C+ Ckkp+g++ f+++dg+ KIAA0613 616 LCAKCNTKIMG-EVMHALRQTWHTTCFVCAACKKPFGNsLFHMEDGE 661 lyCkdc<-* +yC+++ KIAA0613 662 PYCEKD 667 SM00132: domain 3 of 3, from 675 to 728: score 74.2, E = 1.6e-17 *->kCagCgkpItg.devlralgkvwHpeCFkCskCkkpLgg.tffekdg kC+gC+ p++++d+ ++alg++wH CF C++C+ +L+g+ f++k++ KIAA0613 675 KCHGCDFPVEAgDKFIEALGHTWHDTCFICAVCHVNLEGqPFYSKKD 721 klyCkdc<-* +++Ck++ KIAA0613 722 RPLCKKH 728 //