hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08041714/chunk_1/iprscan-20080502-08041714.nocrc
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Query sequence: KIAA0613
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00412.12.ls LIM domain                                     165.7    1.1e-46   3
PF00412.12.fs LIM domain                                     162.3    2.6e-46   3
PF00595.14.fs PDZ domain (Also known as DHR or GLGF)          71.7    1.7e-19   1
PF00595.14.ls PDZ domain (Also known as DHR or GLGF)          73.7    5.6e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00595.14.fs   1/1      11    88 ..     1    86 []    71.7  1.7e-19
PF00595.14.ls   1/1      11    88 ..     1    86 []    73.7  5.6e-19
PF00412.12.fs   1/3     558   614 ..     1    61 []    48.1  2.7e-13
PF00412.12.ls   1/3     558   614 ..     1    61 []    50.1    7e-12
PF00412.12.ls   2/3     617   673 ..     1    61 []    64.8  2.6e-16
PF00412.12.fs   2/3     617   673 ..     1    61 []    62.9  1.5e-17
PF00412.12.fs   3/3     676   728 ..     1    55 [.    51.3  3.3e-14
PF00412.12.ls   3/3     676   733 ..     1    61 []    50.8  4.1e-12

Alignments of top-scoring domains:
PF00595.14.fs: domain 1 of 1, from 11 to 88: score 71.7, E = 1.7e-19
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      +vtl    ++g++Gf+++gg+d    +++ +s++ pGs aA+ +  L
    KIAA0613    11    SVTLT---GPGPWGFRLQGGKDFN--MPLTISRITPGSKAAQSQ--L 50   

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                     GD +++++G+++  ++h+ea+  +k+++   ++Lt++   
    KIAA0613    51 SQGDLVVAIDGVNTDTMTHLEAQNKIKSASY-NLSLTLQ    88   

PF00595.14.ls: domain 1 of 1, from 11 to 88: score 73.7, E = 5.6e-19
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      +vtl    ++g++Gf+++gg+d    +++ +s++ pGs aA+ +  L
    KIAA0613    11    SVTLT---GPGPWGFRLQGGKDFN--MPLTISRITPGSKAAQSQ--L 50   

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                     GD +++++G+++  ++h+ea+  +k+++   ++Lt++   
    KIAA0613    51 SQGDLVVAIDGVNTDTMTHLEAQNKIKSASY-NLSLTLQ    88   

PF00412.12.fs: domain 1 of 3, from 558 to 614: score 48.1, E = 2.7e-13
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C+ C+  I++ +lv  A++++wHpe F+Ca C+++L++   +f+ + 
    KIAA0613   558    CGHCNNVIRGPFLV--AMGRSWHPEEFTCAYCKTSLADV--CFVEEQ 600  

                   sklYCkhDyyklfg<-*
                   +  YC+++y + f+   
    KIAA0613   601 NNVYCERCYEQFFA    614  

PF00412.12.ls: domain 1 of 3, from 558 to 614: score 50.1, E = 7e-12
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C+ C+  I++ +lv  A++++wHpe F+Ca C+++L++   +f+ + 
    KIAA0613   558    CGHCNNVIRGPFLV--AMGRSWHPEEFTCAYCKTSLADV--CFVEEQ 600  

                   sklYCkhDyyklfg<-*
                   +  YC+++y + f+   
    KIAA0613   601 NNVYCERCYEQFFA    614  

PF00412.12.ls: domain 2 of 3, from 617 to 673: score 64.8, E = 2.6e-16
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      Ca+C+ +I ++++   Al   wH  CF+Ca C+kp+g++  f++ dg
    KIAA0613   617    CAKCNTKIMGEVMH--ALRQTWHTTCFVCAACKKPFGNSL-FHMEDG 660  

                   sklYCkhDyyklfg<-*
                    ++YC++Dy +lf+   
    KIAA0613   661 -EPYCEKDYINLFS    673  

PF00412.12.fs: domain 2 of 3, from 617 to 673: score 62.9, E = 1.5e-17
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      Ca+C+ +I ++++   Al   wH  CF+Ca C+kp+g++  f++ dg
    KIAA0613   617    CAKCNTKIMGEVMH--ALRQTWHTTCFVCAACKKPFGNSL-FHMEDG 660  

                   sklYCkhDyyklfg<-*
                    ++YC++Dy +lf+   
    KIAA0613   661 -EPYCEKDYINLFS    673  

PF00412.12.fs: domain 3 of 3, from 676 to 728: score 51.3, E = 3.3e-14
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C+gC+ p+ + ++ + Al++ wH  CF+CavC+ +L+    f++k++
    KIAA0613   676    CHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEGQP-FYSKKD 721  

                   sklYCkhD<-*
                    +++Ck++   
    KIAA0613   722 -RPLCKKH    728  

PF00412.12.ls: domain 3 of 3, from 676 to 733: score 50.8, E = 4.1e-12
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C+gC+ p+ + ++ + Al++ wH  CF+CavC+ +L+    f++k++
    KIAA0613   676    CHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEGQP-FYSKKD 721  

                   sklYCkhDyyklfg<-*
                    +++Ck+ +        
    KIAA0613   722 -RPLCKK-HAHTIN    733  

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