# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg01088b.fasta.huge -Q ../query/KIAA0613.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0613, 734 aa
 vs ./tmplib.23663 library

1986771 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 14.3335+/-0.0137; mu= -27.3903+/- 0.923
 mean_var=815.7090+/-192.936, 0's: 0 Z-trim: 16  B-trim: 0 in 0/40
 Lambda= 0.044906

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0309  ( 3053 res)   hg00096s1                  (3053)  358 39.4  0.0061


>>KIAA0309  ( 3053 res)   hg00096s1                       (3053 aa)
 initn: 170 init1: 170 opt: 358  Z-score: 144.7  bits: 39.4 E(): 0.0061
Smith-Waterman score: 373;  29.084% identity (52.191% similar) in 502 aa overlap (93-557:1146-1602)

             70        80        90       100        110       120 
KIAA06 NTDTMTHLEAQNKIKSASYNLSLTLQKSKRPIPISTTAP-PVQTPLPVIPHQKDPALDTN
                                     :.:  . :: : .. ::.. . . :.: : 
KIAA03 PRPLQMPPTMVNNTGVVKIVVRQAPRDGLTPVPPLAPAPRPPSSGLPAVLNPR-PTL-TP
        1120      1130      1140      1150      1160       1170    

             130        140       150       160       170       180
KIAA06 GSLVAPSPS-PEARASPGTPGTPELRPTFSPAFSRPSAFSSLAEASDPGPPRASLRAKTS
       : :  :.:.   :::   ::    .:: .. . : ::   :   :: ::    ..   .:
KIAA03 GRL--PTPTLGTARAPMPTPTL--VRPLLKLVHS-PSPEVS---ASAPGAAPLTI---SS
            1180      1190        1200          1210      1220     

              190          200       210        220       230      
KIAA06 PEGARDLLGPKALPG---SSQPRQYNNPIGLYSAETLR-EMAQMYQMSLRGKASGVGLPG
       :     :  :..:::   : .:   ..:..   . :.   ...   .:.     . .   
KIAA03 P-----LHVPSSLPGPASSPMPIPNSSPLASPVSSTVSVPLSSSLPISVPTTLPAPASAP
                1230      1240      1250      1260      1270       

        240        250       260       270       280       290     
KIAA06 GSLPIK-DLAVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFMQ
        ..::.  :.:....:   :.. : . :   .   :    .:           .:.    
KIAA03 LTIPISAPLTVSASGP---ALLTSVTPPLAPVVPAAPGPPSLAP---------SGA----
      1280      1290         1300      1310               1320     

         300       310       320           330         340         
KIAA06 DPDEEALRRSSTPIEHAPVCTSQATT--PLL--PASAQPPAAASP--SAASPPLATAAAH
       .:.  ::   .  .  ::  .:. :   :::  :.:.. :.  :    : :: :. :   
KIAA03 SPSASAL---TLGLATAPSLSSSQTPGHPLLLAPTSSHVPGLNSTVAPACSPVLVPA---
               1330      1340      1350      1360      1370        

     350       360        370       380         390         400    
KIAA06 TAIASASTTAPASSPAD-SPRPQASSYSPAVAASSAP--ATHTSY-SEGPAAP-APKPRV
       .:.::   .::  .::. :    ::: : :.:.  ::  : .:.  . .:: : :: : .
KIAA03 SALASPFPSAPNPAPAQASLLAPASSASQALATPLAPMAAPQTAILAPSPAPPLAPLPVL
        1380      1390      1400      1410      1420      1430     

          410          420       430       440       450       460 
KIAA06 VTTASIRP---SVYQPVPASTYSPSPGANYSPTPYTPSPAPAYTPSPAPAYTPSPVPTYT
       . . .  :   :   :::. . : .::.. . .  .:.:.:. .:: . .. :.:::.  
KIAA03 APSPGAAPVLASSQTPVPVMAPSSTPGTSLASASPVPAPTPVLAPSSTQTMLPAPVPSPL
        1440      1450      1460      1470      1480      1490     

             470            480       490       500       510      
KIAA06 PSPAPAYTPSPAPNYNP-----APSVAYSGGPAEPASRPPWVTDDSFSQKFAPGKSTTSI
       :::: . : . ::   :     .:: . : : ..:  . :. :.   . ...:..: .  
KIAA03 PSPASTQTLALAPALAPTLGGSSPSQTLSLGTGNP--QGPFPTQ---TLSLTPASSLVPT
        1500      1510      1520      1530           1540      1550

        520                530         540       550       560     
KIAA06 SKQTL-----PRGGPAYT----PAGPQVP--PLARGTVQRAERFPASSRTPLCGHCNNVI
         :::     :  ::. :    :: : .:  :.. . ..     :::: . :        
KIAA03 PAQTLSLAPGPPLGPTQTLSLAPAPPLAPASPVGPAPAHTLTLAPASSSASLLAPASVQT
             1560      1570      1580      1590      1600      1610

         570       580       590       600       610       620     
KIAA06 RGPFLVAMGRSWHPEEFTCAYCKTSLADVCFVEEQNNVYCERCYEQFFAPLCAKCNTKIM
                                                                   
KIAA03 LTLSPAPVPTLGPAAAQTLALAPASTQSPASQASSLVVSASGAAPLPVTMVSRLPVSKDE
             1620      1630      1640      1650      1660      1670




734 residues in 1 query   sequences
1986771 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:09:10 2008 done: Thu Dec 18 15:09:11 2008
 Total Scan time:  0.570 Total Display time:  0.050

Function used was FASTA [version 34.26.5 April 26, 2007]