hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08005056/chunk_1/iprscan-20080502-08005056.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0611 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00702.16.fs haloacid dehalogenase-like hydrolase 27.2 1.9e-07 2 PF00702.16.ls haloacid dehalogenase-like hydrolase 17.6 0.0016 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00702.16.ls 1/1 250 671 .. 1 183 [] 17.6 0.0016 Alignments of top-scoring domains: PF00702.16.ls: domain 1 of 1, from 250 to 671: score 17.6, E = 0.0016 *->ikavvFDkDGTLtdgkeppiaeaiveaaaelgllpleevekllgrgl i ++ Dk+GTLt+ + i + + ++gl +++ev +++ + KIAA0611 250 ISYLLTDKTGTLTQ--NEMIFKRLHLGTVAYGLDSMDEVQSHIFSIY 294 .gerilleggltaell.................................. ++ + ++ ++++ + l+++ +++ +++ ++ + ++ ++ ++++ KIAA0611 295 tQ-QSQDPPAQKGPTLttkvrrtmssrvheavkaialchnvtpvyesngv 343 .................................................. ++ + ++ +++ + +++++ +++ + + +++ ++ ++ KIAA0611 344 tdqaeaekqyedscrvyqasspdevalvqwtesvgltlvgrdqssmqlrt 393 .................................................. +++ + + + + ++++ + +++++++ + ++ + + KIAA0611 394 pgdqilnftilqifpftyeskrmgiivrdestgeitfymkgadvvmagiv 443 .................................................. ++ +++ ++ +++ + +++ ++ + + + + + +++ KIAA0611 444 qyndwleeecgnmareglrvlvvakkslaeeqyqdfearyvqaklsvhdr 493 .............d.evlglial.dklypgarealkaLkrrGikvailTg + + + ++ + + e+l+l ++d+l ++r++l+ L+ +Gikv++lTg KIAA0611 494 slkvatvieslemEmELLCLTGVeDQLQADVRPTLETLRNAGIKVWMLTG 543 gdr.naealle....................................... + ++a +++ + +++++ + + +++++ + + + +++++ KIAA0611 544 DKLeTATCTAKnahlvtrnqdihvfrlvtnrgeahlelnafrrkhdcalv 593 ........algla.lfdviidsdevggvgpivvgKPkpeifllalerlgv ++++ + +l + ++++ +++++ ++v+ + +p + ++++ l+ KIAA0611 594 isgdslevCLK-YyEYEFMELACQCP---AVVCCRCAPTQKAQIVRLLQE 639 kpeevgpevlmVGDgvnDapalaaAGvgvamgngg<-* + + +++VGDg nD+ ++ ++gv KIAA0611 640 RTGKL---TCAVGDGGNDVSMIQESDCGVGVEGKE 671 //