hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07523378/chunk_1/iprscan-20080502-07523378.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0606 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00332 208.5 6e-58 1 SM00369 90.2 2.4e-22 10 SM00364 89.1 5.1e-22 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00369 1/10 342 365 .. 1 24 [] 10.1 25 SM00364 1/10 344 361 .. 1 20 [] 3.2 2.4e+02 SM00364 2/10 365 384 .. 1 20 [] 11.6 19 SM00369 2/10 388 410 .. 1 24 [] 11.1 18 SM00369 3/10 411 433 .. 1 24 [] 8.9 34 SM00364 3/10 411 430 .. 1 20 [] 5.8 1.1e+02 SM00369 4/10 434 457 .. 1 24 [] 2.3 2.2e+02 SM00369 5/10 482 505 .. 1 24 [] 13.2 10 SM00364 4/10 545 564 .. 1 20 [] 19.7 0.42 SM00364 5/10 568 587 .. 1 20 [] 6.1 1e+02 SM00369 6/10 569 591 .. 1 24 [] 10.3 23 SM00364 6/10 591 610 .. 1 20 [] 10.4 28 SM00369 7/10 592 614 .. 1 24 [] 3.7 1.5e+02 SM00364 7/10 615 632 .. 1 20 [] 1.0 4.6e+02 SM00369 8/10 615 636 .. 1 24 [] 5.7 84 SM00364 8/10 637 656 .. 1 20 [] 12.0 17 SM00369 9/10 639 660 .. 1 24 [] 5.3 93 SM00364 9/10 687 706 .. 1 20 [] 12.7 14 SM00364 10/10 711 730 .. 1 20 [] 6.8 80 SM00369 10/10 711 734 .. 1 24 [] 19.6 0.45 SM00332 1/1 817 1072 .. 1 338 [] 208.5 6e-58 Alignments of top-scoring domains: SM00369: domain 1 of 10, from 342 to 365: score 10.1, E = 25 *->LpnLreLdLsnNqLtsLPpgaFqg<-* ++L++L+LsnN+L P +++ KIAA0606 342 FTKLKSLNLSNNHLGDFPLAVCSI 365 SM00364: domain 1 of 10, from 344 to 361: score 3.2, E = 2.4e+02 *->PpsLkeLnvsnNrLteLPeL<-* +Lk+Ln snN+L ++P KIAA0606 344 --KLKSLNLSNNHLGDFPLA 361 SM00364: domain 2 of 10, from 365 to 384: score 11.6, E = 19 *->PpsLkeLnvsnNrLteLPeL<-* p+L eLnvs+N L++ P+ KIAA0606 365 IPTLAELNVSCNALRSVPAA 384 SM00369: domain 2 of 10, from 388 to 410: score 11.1, E = 18 *->LpnLreLdLsnNqLtsLPpgaFqg<-* ++nL++ L++N L+sLP+++ ++ KIAA0606 388 MHNLQTFLLDGNFLQSLPAEL-EN 410 SM00369: domain 3 of 10, from 411 to 433: score 8.9, E = 34 *->LpnLreLdLsnNqLtsLPpgaFqg<-* + +L L Ls+N +t +P ++++ KIAA0606 411 MKQLSYLGLSFNEFTDIP-EVLEK 433 SM00364: domain 3 of 10, from 411 to 430: score 5.8, E = 1.1e+02 *->PpsLkeLnvsnNrLteLPeL<-* +L +L+ s+N+ t+ Pe KIAA0606 411 MKQLSYLGLSFNEFTDIPEV 430 SM00369: domain 4 of 10, from 434 to 457: score 2.3, E = 2.2e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++ +L s+N ++L +a++ KIAA0606 434 LTAVDKLCMSGNCVETLRLQALRK 457 SM00369: domain 5 of 10, from 482 to 505: score 13.2, E = 10 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L + + LdL +N+L L + +F++ KIAA0606 482 LQHVTQLDLRDNKLGDLDAMIFNN 505 SM00364: domain 4 of 10, from 545 to 564: score 19.7, E = 0.42 *->PpsLkeLnvsnNrLteLPeL<-* P+ L +++vs+NrL++ Pe KIAA0606 545 PNYLSYMDVSRNRLENVPEW 564 SM00364: domain 5 of 10, from 568 to 587: score 6.1, E = 1e+02 *->PpsLkeLnvsnNrLteLPeL<-* +L+ L++++N++ eLP+ KIAA0606 568 SRKLEVLDIGHNQICELPAR 587 SM00369: domain 6 of 10, from 569 to 591: score 10.3, E = 23 *->LpnLreLdLsnNqLtsLPpgaFqg<-* ++L++Ld ++Nq+ +LP+++F + KIAA0606 569 -RKLEVLDIGHNQICELPARLFCN 591 SM00364: domain 6 of 10, from 591 to 610: score 10.4, E = 28 *->PpsLkeLnvsnNrLteLPeL<-* +sL++L +++N+L +LPe KIAA0606 591 NSSLRKLLAGHNQLARLPER 610 SM00369: domain 7 of 10, from 592 to 614: score 3.7, E = 1.5e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* ++Lr+L ++NqL +LP+++ + KIAA0606 592 -SSLRKLLAGHNQLARLPERLERT 614 SM00364: domain 7 of 10, from 615 to 632: score 1.0, E = 4.6e+02 *->PpsLkeLnvsnNrLteLPeL<-* s + L+v++N+L eLP + KIAA0606 615 --SVEVLDVQHNQLLELPPN 632 SM00369: domain 8 of 10, from 615 to 636: score 5.7, E = 84 *->LpnLreLdLsnNqLtsLPpgaFqg<-* + ++Ld ++NqL +LPp+++ KIAA0606 615 --SVEVLDVQHNQLLELPPNLLMK 636 SM00364: domain 8 of 10, from 637 to 656: score 12.0, E = 17 *->PpsLkeLnvsnNrLteLPeL<-* +sL++Ln+s N+L++LP KIAA0606 637 ADSLRFLNASANKLESLPPA 656 SM00369: domain 9 of 10, from 639 to 660: score 5.3, E = 93 *->LpnLreLdLsnNqLtsLPpgaFqg<-* +Lr L+ s N+L+sLPp +++ KIAA0606 639 --SLRFLNASANKLESLPPATLSE 660 SM00364: domain 9 of 10, from 687 to 706: score 12.7, E = 14 *->PpsLkeLnvsnNrLteLPeL<-* p+Lk+L+ +NrL ++P+ KIAA0606 687 HPHLKILHMAYNRLQSFPAS 706 SM00364: domain 10 of 10, from 711 to 730: score 6.8, E = 80 *->PpsLkeLnvsnNrLteLPeL<-* ++L+e++ s+N+L+ P KIAA0606 711 LEELEEIDLSGNKLKAIPTT 730 SM00369: domain 10 of 10, from 711 to 734: score 19.6, E = 0.45 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L +L+e dLs+N+L+++P + ++ KIAA0606 711 LEELEEIDLSGNKLKAIPTTIMNC 734 SM00332: domain 1 of 1, from 817 to 1072: score 208.5, E = 6e-58 *->es.sgknlglryglgessmqgwrkpmEDahvirp........ffgVf + sg ++ +++g+ ++ g++ + a + +++ ++++ ++gVf KIAA0606 817 GDaSGAPAVWSHGY--TEASGVKNKLCVAALSVNnfcdnreaLYGVF 861 DGHGGseaakflsknlheilaeelsfdkdeslkeneelkdepesserlng DG + e+ l+ + +ilaeel++ k KIAA0606 862 DGDRNVEVPYLLQCTMSDILAEELQKTKN--------------------- 890 dksledveealrkaFlrtdeei........sTAvvalirgnk........ ee++ ++F + ++++ +++ + Av+++i+ + +++++ + KIAA0606 891 ------EEEYMVNTFIVMQRKLgtagqklgGAAVLCHIKHDPvdpggsft 934 lyvANvGDSRavLcrngkdswegvrtysavqLteDHkpsnedEreRIeaa l ANvG ++ vLcrngk +++L++ s+e+E++RI++ KIAA0606 935 LTSANVGKCQTVLCRNGK----------PLPLSRSYIMSCEEELKRIKQH 974 GGevepidrefvsngggvvwRvnGvvisLavsRalGDfelKkkedeliee + + ++g +vnGv + +R lG+ +l KIAA0606 975 KA-------IITEDG-----KVNGV---TESTRILGYTFLH--------- 1000 nrlyekfdprlpgkepyvsaePevtvvelsqtlvptedddfliLASDGlW p v++ P+v++v l t++d+f+iL+S GlW KIAA0606 1001 ---------------PSVVPRPHVQSVLL------TPQDEFFILGSKGLW 1029 Dvlsnqeavdivrkhlrkgddkevksaaqelaradslrskkhndpkeaak D ls +eav+ vr+ d+ +aak KIAA0606 1030 DSLSVEEAVEAVRNVP---------------------------DALAAAK 1052 lLvdlAl....kDNiTvvvv<-* +L+ lA++ + +D i++vvv KIAA0606 1053 KLCTLAQsygcHDSISAVVV 1072 //