hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07523378/chunk_1/iprscan-20080502-07523378.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0606 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00560.23.ls Leucine Rich Repeat 166.7 5.5e-47 20 PF00560.23.fs Leucine Rich Repeat 131.0 3e-36 20 PF00481.12.fs Protein phosphatase 2C 100.4 4.3e-28 1 PF00481.12.ls Protein phosphatase 2C 92.7 1e-24 1 PF00169.19.fs PH domain 30.1 1.1e-08 1 PF00169.19.ls PH domain 32.1 1.8e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00169.19.fs 1/1 189 288 .. 1 92 [] 30.1 1.1e-08 PF00169.19.ls 1/1 189 288 .. 1 92 [] 32.1 1.8e-06 PF00560.23.ls 1/20 290 308 .. 1 24 [] 8.1 8 PF00560.23.ls 3/20 344 365 .. 1 24 [] 12.6 1.2 PF00560.23.ls 4/20 367 388 .. 1 24 [] 8.5 6.7 PF00560.23.fs 5/20 390 411 .. 1 24 [] 10.9 0.061 PF00560.23.ls 5/20 390 411 .. 1 24 [] 12.8 1.1 PF00560.23.ls 6/20 413 434 .. 1 24 [] 12.5 1.2 PF00560.23.fs 12/20 570 592 .. 1 24 [] 13.3 0.014 PF00560.23.ls 12/20 570 592 .. 1 24 [] 15.1 0.23 PF00560.23.ls 14/20 615 633 .. 1 24 [] 10.8 2.5 PF00560.23.ls 15/20 639 661 .. 1 24 [] 9.5 4.3 PF00560.23.ls 17/20 689 711 .. 1 24 [] 10.4 3 PF00560.23.fs 18/20 713 734 .. 1 24 [] 12.0 0.031 PF00560.23.ls 18/20 713 734 .. 1 24 [] 13.9 0.55 PF00560.23.ls 20/20 781 803 .. 1 24 [] 9.1 5.2 PF00481.12.ls 1/1 826 1067 .. 1 303 [] 92.7 1e-24 PF00481.12.fs 1/1 938 1067 .. 137 303 .] 100.4 4.3e-28 Alignments of top-scoring domains: PF00169.19.fs: domain 1 of 1, from 189 to 288: score 30.1, E = 1.1e-08 *->vikeGwLlkkg.....gkkswkkRyfvLfddvLlyykdkk..kkpkg + +G +++++ + +w +R ++L++++L+ k++ + + KIAA0606 189 IQLSGMYNVRKgkmqlPVNRWTRRQVILCGTCLIVSSVKDslTGKMH 235 sipLsgiqvtkvpdnkrkncFeirt.dr..etlllqaeseeerkeWvkai ++pL g +v++v++ +++c+ ++++++++t+++++++ e +W+++ KIAA0606 236 VLPLIGGKVEEVKK--HQHCLAFSSsGPqsQTYYICFDTFTEYLRWLRQV 283 qsair<-* +++++ KIAA0606 284 SKVAS 288 PF00169.19.ls: domain 1 of 1, from 189 to 288: score 32.1, E = 1.8e-06 *->vikeGwLlkkg.....gkkswkkRyfvLfddvLlyykdkk..kkpkg + +G +++++ + +w +R ++L++++L+ k++ + + KIAA0606 189 IQLSGMYNVRKgkmqlPVNRWTRRQVILCGTCLIVSSVKDslTGKMH 235 sipLsgiqvtkvpdnkrkncFeirt.dr..etlllqaeseeerkeWvkai ++pL g +v++v++ +++c+ ++++++++t+++++++ e +W+++ KIAA0606 236 VLPLIGGKVEEVKK--HQHCLAFSSsGPqsQTYYICFDTFTEYLRWLRQV 283 qsair<-* +++++ KIAA0606 284 SKVAS 288 PF00560.23.ls: domain 1 of 20, from 290 to 308: score 8.1, E = 8 *->nLeeLdLsgCNpsltgslpsslnl<-* ++ ++dLs+C sl+ +lp+ nl KIAA0606 290 RISSVDLSCC--SLE-HLPA--NL 308 PF00560.23.ls: domain 3 of 20, from 344 to 365: score 12.6, E = 1.2 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L++L+Ls+ N +l g++p + + KIAA0606 344 KLKSLNLSN-N-HL-GDFPLAVcSI 365 PF00560.23.ls: domain 4 of 20, from 367 to 388: score 8.5, E = 6.7 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L eL++s+ N l +s+p+ ++++ KIAA0606 367 TLAELNVSC-N-AL-RSVPAAVgVM 388 PF00560.23.fs: domain 5 of 20, from 390 to 411: score 10.9, E = 0.061 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL++ L+g N l+ slp++l+n+ KIAA0606 390 NLQTFLLDG-N-FLQ-SLPAELeNM 411 PF00560.23.ls: domain 5 of 20, from 390 to 411: score 12.8, E = 1.1 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL++ L+g N l+ slp++l+n+ KIAA0606 390 NLQTFLLDG-N-FLQ-SLPAELeNM 411 PF00560.23.ls: domain 6 of 20, from 413 to 434: score 12.5, E = 1.2 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L +L Ls N +t ++p+ l++l KIAA0606 413 QLSYLGLSF-N-EFT-DIPEVLeKL 434 PF00560.23.fs: domain 12 of 20, from 570 to 592: score 13.3, E = 0.014 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +Le+Ld+++ N ++ +lp+ + n KIAA0606 570 KLEVLDIGH-N-QIC-ELPARlFcNS 592 PF00560.23.ls: domain 12 of 20, from 570 to 592: score 15.1, E = 0.23 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +Le+Ld+++ N ++ +lp+ + n KIAA0606 570 KLEVLDIGH-N-QIC-ELPARlFcNS 592 PF00560.23.ls: domain 14 of 20, from 615 to 633: score 10.8, E = 2.5 *->nLeeLdLsgCNpsltgslpsslnl<-* ++e+Ld+++ N +l +lp+ nl KIAA0606 615 SVEVLDVQH-N-QLL-ELPP--NL 633 PF00560.23.ls: domain 15 of 20, from 639 to 661: score 9.5, E = 4.3 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L+ L+ s N +l+ slp+ +l+ KIAA0606 639 SLRFLNASA-N-KLE-SLPPAtLsEE 661 PF00560.23.ls: domain 17 of 20, from 689 to 711: score 10.4, E = 3 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L++ + N +l+ s+p+s+ +l KIAA0606 689 HLKILHMAY-N-RLQ-SFPASkMaKL 711 PF00560.23.fs: domain 18 of 20, from 713 to 734: score 12.0, E = 0.031 *->nLeeLdLsgCNpsltgslpssl.nl<-* +Lee+dLsg N +l + +p + n+ KIAA0606 713 ELEEIDLSG-N-KL-KAIPTTImNC 734 PF00560.23.ls: domain 18 of 20, from 713 to 734: score 13.9, E = 0.55 *->nLeeLdLsgCNpsltgslpssl.nl<-* +Lee+dLsg N +l + +p + n+ KIAA0606 713 ELEEIDLSG-N-KL-KAIPTTImNC 734 PF00560.23.ls: domain 20 of 20, from 781 to 803: score 9.1, E = 5.2 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+eLdL g Np+l+ ++ l+ l KIAA0606 781 KLQELDLTG-NPRLV-LDHKTLeLL 803 PF00481.12.ls: domain 1 of 1, from 826 to 1067: score 92.7, E = 1e-24 *->ldvgvsrmqgwrksmeDahialknlnssssgkdsisffavfDghgGs + +g ++ +g++ ++ a ++ +n+ +++ +++++vfDg + KIAA0606 826 WSHGYTEASGVKNKLCVAALSVNNF-----CDNREALYGVFDGDRNV 867 qaakyagkhlekaltilaerksfpegnpnEwklsdledalrksfleadtd ++ ++ +ilae + +e+ + ++f + KIAA0606 868 EVPYLLQCTMS---DILAEELQKTKN---------EEEYMVNTFIV--MQ 903 eelrsaadsanhvltkedlssGsTAvvalirgqkk......lLyvANvGD +l + + ++ G Av++ i ++ +++++ L ANvG KIAA0606 904 RKLGT-----------AGQKLGGAAVLCHIKHDPVdpggsfTLTSANVGK 942 SravLcrngnaiklvtqLtedHkpsdedEkrRIeaaGGfvsrvsgngRvn +++vLcrng++ +L++ s+e+E +RI++ + g+vn KIAA0606 943 CQTVLCRNGKPL----PLSRSYIMSCEEELKRIKQHKAIITE---DGKVN 985 GvfLavSRAfGDfelKpnvtlgpelslerGifseeqpVsaePdvtsstki Gv + +R +G+++l p V++ P+v+ s+ + KIAA0606 986 GV-TESTRILGYTFLHP-------------------SVVPRPHVQ-SVLL 1014 teskDeFliLAcDGlWDvvsdqeavdivrselsdgnksagspmeaaekLv t++ DeF+iL++ GlWD +s +eav+ vr + ++ aa+kL+ KIAA0606 1015 TPQ-DEFFILGSKGLWDSLSVEEAVEAVRNVPD--------ALAAAKKLC 1055 deAiargseDni<-* ++A+++g++D+i KIAA0606 1056 TLAQSYGCHDSI 1067 PF00481.12.fs: domain 1 of 1, from 938 to 1067: score 100.4, E = 4.3e-28 *->ANvGDSravLcrngnaiklvtqLtedHkpsdedEkrRIeaaGGfvsr ANvG +++vLcrng++ +L++ s+e+E +RI++ + KIAA0606 938 ANVGKCQTVLCRNGKPL----PLSRSYIMSCEEELKRIKQHKAIITE 980 vsgngRvnGvfLavSRAfGDfelKpnvtlgpelslerGifseeqpVsaeP g+vnGv + +R +G+++l p V++ P KIAA0606 981 ---DGKVNGV-TESTRILGYTFLHP-------------------SVVPRP 1007 dvtsstkiteskDeFliLAcDGlWDvvsdqeavdivrselsdgnksagsp +v+ s+ +t++ DeF+iL++ GlWD +s +eav+ vr + + KIAA0606 1008 HVQ-SVLLTPQ-DEFFILGSKGLWDSLSVEEAVEAVRNVPD--------A 1047 meaaekLvdeAiargseDni<-* + aa+kL+++A+++g++D+i KIAA0606 1048 LAAAKKLCTLAQSYGCHDSI 1067 //