hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07473075/chunk_1/iprscan-20080502-07473075.nocrc
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Query sequence: KIAA0603
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00566.9.ls TBC domain                                     111.6    2.1e-30   1
PF00566.9.fs TBC domain                                     109.7    3.3e-30   1
PF00640.13.fs Phosphotyrosine interaction domain (PTB/PID)    32.8    2.3e-09   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00640.13.fs   1/2     179   237 ..   101   165 .]    17.2  8.4e-05
PF00566.9.fs   1/1     965  1184 ..     1   219 []   109.7  3.3e-30
PF00566.9.ls   1/1     965  1184 ..     1   219 []   111.6  2.1e-30

Alignments of top-scoring domains:
PF00640.13.fs: domain 1 of 2, from 179 to 237: score 17.2, E = 8.4e-05
                   *->ggDpdVdlrtFayarrsqd.iiaadgatgkfaCHvFecekgkqlAed
                      +++++ dl +Fay        ++ d++ +++aCHvF++ +  ++  d
    KIAA0603   179    IHNSH-DLTYFAY-----LiKAQPDDPESQMACHVFRATD-PSQVPD 218  

                   iaqavGqAFevaYqeflra<-*
                   ++++++q+   a++e  +    
    KIAA0603   219 VISSIRQLSKAAMKEDAKP    237  

PF00566.9.fs: domain 1 of 1, from 965 to 1184: score 109.7, E = 3.3e-30
                   *->vkeGvpsstrakVWavcsgAyqlrYAsage.......Yerllrrgde
                       keGvp s r+++W  +   y lr   +  +++++ +Y +ll++   
    KIAA0603   965    LKEGVPKSRRGEIWQFLALQYRLRHRLPNKqqppdisYKELLKQLTA 1011 

                   kesqavdkIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvg
                      +    I  D+ Rt +    F  +  G+g+ +L ++L AYs    +vg
    KIAA0603  1012 QQHA----ILVDLGRTFPTHPYFSVQ-LGPGQLSLFNLLKAYSLLDKEVG 1056 

                   YcQGMNVvaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDq
                   YcQG   va  +Ll + SEeqAF +L  L+      K y pd++      
    KIAA0603  1057 YCQGISFVAGVLLLHM-SEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQM 1105 

                   kvLdsfveellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIf
                     L   + +    LY +L+   +  + ++ pwfL+L+a    l    r+f
    KIAA0603  1106 YQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTLFASQFSLGFVARVF 1155 

                   DiLFadGivllfrvaLAvLkilkeqiLda<-*
                   Di F  G  + f+vaL  L +    i+++   
    KIAA0603  1156 DIIFLQGTEVIFKVALSLLSSQETLIMEC    1184 

PF00566.9.ls: domain 1 of 1, from 965 to 1184: score 111.6, E = 2.1e-30
                   *->vkeGvpsstrakVWavcsgAyqlrYAsage.......Yerllrrgde
                       keGvp s r+++W  +   y lr   +  +++++ +Y +ll++   
    KIAA0603   965    LKEGVPKSRRGEIWQFLALQYRLRHRLPNKqqppdisYKELLKQLTA 1011 

                   kesqavdkIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvg
                      +    I  D+ Rt +    F  +  G+g+ +L ++L AYs    +vg
    KIAA0603  1012 QQHA----ILVDLGRTFPTHPYFSVQ-LGPGQLSLFNLLKAYSLLDKEVG 1056 

                   YcQGMNVvaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDq
                   YcQG   va  +Ll + SEeqAF +L  L+      K y pd++      
    KIAA0603  1057 YCQGISFVAGVLLLHM-SEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQM 1105 

                   kvLdsfveellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIf
                     L   + +    LY +L+   +  + ++ pwfL+L+a    l    r+f
    KIAA0603  1106 YQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTLFASQFSLGFVARVF 1155 

                   DiLFadGivllfrvaLAvLkilkeqiLda<-*
                   Di F  G  + f+vaL  L +    i+++   
    KIAA0603  1156 DIIFLQGTEVIFKVALSLLSSQETLIMEC    1184 

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