hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07441230/chunk_1/iprscan-20080502-07441230.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0601 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01593.14.ls Flavin containing amine oxidoreductase 425.5 6.7e-125 1 PF01593.14.fs Flavin containing amine oxidoreductase 423.7 2.4e-124 1 PF04433.7.ls SWIRM domain 88.3 2.1e-23 1 PF04433.7.fs SWIRM domain 86.3 8.4e-23 1 PF01266.14.fs FAD dependent oxidoreductase 35.2 8.2e-10 1 PF00070.17.fs Pyridine nucleotide-disulphide oxidored 27.4 1.8e-07 2 PF07992.4.fs Pyridine nucleotide-disulphide oxidored 26.8 7.6e-07 1 PF00890.14.fs FAD binding domain 18.6 1.8e-05 1 PF01266.14.ls FAD dependent oxidoreductase -34.2 0.00093 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04433.7.ls 1/1 208 298 .. 1 95 [] 88.3 2.1e-23 PF04433.7.fs 1/1 208 298 .. 1 95 [] 86.3 8.4e-23 PF00070.17.fs 1/2 314 351 .. 1 37 [. 26.4 3.4e-07 PF01266.14.fs 1/1 314 349 .. 1 35 [. 35.2 8.2e-10 PF00890.14.fs 1/1 314 349 .. 1 37 [. 18.6 1.8e-05 PF07992.4.fs 1/1 314 349 .. 1 44 [. 26.8 7.6e-07 PF01266.14.ls 1/1 314 765 .. 1 402 [] -34.2 0.00093 PF01593.14.fs 1/1 322 860 .. 1 481 [] 423.7 2.4e-124 PF01593.14.ls 1/1 322 860 .. 1 481 [] 425.5 6.7e-125 Alignments of top-scoring domains: PF04433.7.ls: domain 1 of 1, from 208 to 298: score 88.3, E = 2.1e-23 *->lkeasyaswldlsaltpiEllsepEfflgktlsgrktpevYLviRns +++a+++s+l+ +++t+ E++++p++ g++ t++v+L iRn+ KIAA0601 208 VEGAAFQSRLPHDRMTSQEAACFPDIISGPQQ----TQKVFLFIRNR 250 iislwrlnptkyltktdarrnlagpfnsDvnlvsrvydFLerwGyINy<- ++ lw++np+++lt+++ + l p+nsD lv rv+ +Ler+G+IN+ KIAA0601 251 TLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINF 298 * KIAA0601 - - PF04433.7.fs: domain 1 of 1, from 208 to 298: score 86.3, E = 8.4e-23 *->lkeasyaswldlsaltpiEllsepEfflgktlsgrktpevYLviRns +++a+++s+l+ +++t+ E++++p++ g++ t++v+L iRn+ KIAA0601 208 VEGAAFQSRLPHDRMTSQEAACFPDIISGPQQ----TQKVFLFIRNR 250 iislwrlnptkyltktdarrnlagpfnsDvnlvsrvydFLerwGyINy<- ++ lw++np+++lt+++ + l p+nsD lv rv+ +Ler+G+IN+ KIAA0601 251 TLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINF 298 * KIAA0601 - - PF00070.17.fs: domain 1 of 2, from 314 to 351: score 26.4, E = 3.4e-07 *->rvvVvGGGyIGlElAsalaklGseVTvverldrlL.rg<-* +v+++G+G++Gl +A l ++G++VT++e++dr+ +r+ KIAA0601 314 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGgRV 351 PF01266.14.fs: domain 1 of 1, from 314 to 349: score 35.2, E = 8.2e-10 *->DVvVIGGGivGlstAyhLakrGlsVtllErg.digs<-* +V++IG G+ Gl++A++L+ G +VtllE+++++g+ KIAA0601 314 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARdRVGG 349 PF00890.14.fs: domain 1 of 1, from 314 to 349: score 18.6, E = 1.8e-05 *->DVvViGsGlAGLaAAleaAeaGlkkVavvekgqpfgg<-* V++iGsG GLaAA ++ G +V+++e+ ++gg KIAA0601 314 KVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGG 349 PF07992.4.fs: domain 1 of 1, from 314 to 349: score 26.8, E = 7.6e-07 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->dvvIIGgGpAGlaAAirlaralgefglkvalitEEkekeftpgg<-* +v+IIG+G GlaAA++l + g++v+l E +++ gg KIAA0601 314 KVIIIGSGVSGLAAARQLQS-F---GMDVTLL-EARDRV---GG 349 PF01266.14.ls: domain 1 of 1, from 314 to 765: score -34.2, E = 0.00093 *->DVvVIGGGivGlstAyhLakrGlsVtllErg.digs.GaSgrnaGli +V++IG G+ Gl++A++L+ G +VtllE+++++g++ a++r + + KIAA0601 314 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARdRVGGrVATFRKGNYV 360 hpg............................................... + ++ ++++ ++ + + + + + ++ ++ ++ KIAA0601 361 ADLgamvvtglggnpmavvskqvnmelakikqkcplyeangqavpkekde 410 .................................................. ++ ++ ++ + + ++++ + + ++ ++ KIAA0601 411 mveqefnrlleatsylshqldfnvlnnkpvslgqalevviqlqekhvkde 460 .lryleqgrWllldlvreagkerallarla.esrdl...lrel.e.leel + +++ k +++l +l + + l+++++el+++ +e KIAA0601 461 qIEHWKKI-----------VKTQEELKELLnKMVNLkekIKELhQqYKEA 499 gidcdfrrtGglylar...deaeld.lerlaaalralGlpedvelLdaee +++ r + + ++++ + + +++ ++++ +G e e KIAA0601 500 S-EVKPPRDITAEFLVkskHRDLTAlCKEYDELAETQGKLE-------EK 541 lrelePgls.pglvgalfypddghvdParlvraLar.............. l+ele ++p ++++d ++ ++ ++ ++ ++ ++ + ++ + KIAA0601 542 LQELE--ANpP--SDVYLSSRDRQILDWHFANLEFAnatplstlslkhwd 587 ......................aAealGveilegteVtgleregggrvv. ++++ + ++++ + +++ + + A a G +i +t+V+ +++++ g + KIAA0601 588 qdddfeftgshltvrngyscvpVALAEGLDIKLNTAVRQVRYTASG-CEv 636 VeTedGeirA.f.i.AdkVVnAaGawsdelarllgl.lprIvPYfLkplr + ++ ++ +f ++d+V + +++ + + + + KIAA0601 637 IAVNTRSTSQtFiYkCDAVLCTLPLGVLK---QQPPaV------------ 671 d.iplrPvrGqvlvteplpealapallppdeavgdsrgvyiipreGgvli + +p P ++ v + + l+ ++l +d+ ++ KIAA0601 672 QfVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW---------------- 705 Gattdgrldfgggpeevsg.didvdlarleellerarrlfPqLadadilr ++ + g++++++ + ++ +++ ++ P L + ++ KIAA0601 706 -----DPSVNLFGHVGSTTaSRGELF----LFWNLYK--APILLAL-VAG 743 awaGlRpltpDglPiigtpDtskPviGrvpglpglyvatGhgghGltlap + aG++ D + KIAA0601 744 EAAGIMENISDDV------------------------------------- 756 aiGkllAel<-* ++G+ lA l KIAA0601 757 IVGRCLAIL 765 PF01593.14.fs: domain 1 of 1, from 322 to 860: score 423.7, E = 2.4e-124 *->laGLaAAreLlraGfqdVtvlEArdRvGGRirtvrfkggdadgflie ++GLaAAr+L+++G+ dVt+lEArdRvGGR+ t+r + +++++ KIAA0601 322 VSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKG-----NYVAD 362 lGaqwfhgaypnllnlllelglelglelfpfpgdvflgl.rdg.pypdvp lGa++++ + n ++ ++++ ++el + +++++l+ ++ ++++++ KIAA0601 363 LGAMVVT---GLGGNPMAVVSKQVNMELAKIKQKCPLYEaNGQaVPKEKD 409 gdlppp..............lelel.leepirl.alll.allllapelle ++++++ ++ + ++ +++l++ + + +p++l+++l+ +++l ++++++ KIAA0601 410 EMVEQEfnrlleatsylshqLDFNVlNNKPVSLgQALEvVIQLQEKHVKD 459 ldllsfsdll.aagflelflke............................ + ++ ++ +++l+ +l+ + +++ ++ +++ ++ ++ +++++ + KIAA0601 460 EQIEHWKKIVkTQEELKELLNKmvnlkekikelhqqykeasevkpprdit 509 ................................................lf + ++++++ + ++ ++ +++++ +++ ++ + +++++ ++++ KIAA0601 510 aeflvkskhrdltalckeydelaetqgkleeklqeleanppsdvylssRD 559 rsllagalgflelelsarlallslalfdledgggkfpgggfllplGglpq r++l++++ +le++++++l++lsl+++d++d++ +f g+++++ +G++++ KIAA0601 560 RQILDWHFANLEFANATPLSTLSLKHWDQDDDF-EFTGSHLTVRNGYSCV 608 llaaalgllggrvrlntrVrsirqegdgvtvttedGedgtkgdesetiea ++a+a+gl+ ++lnt Vr++r+ ++g+ v ++ + +++++ +++ KIAA0601 609 PVALAEGLD---IKLNTAVRQVRYTASGCEVIAVNTR---STSQTFIYKC 652 DaVivtvPlgvlkr..hlilflPpLpaakqrairrlgfgsvsKvflefet DaV +t+Plgvlk ++++++f+PpLp++k a++r+gfg+++Kv+l+f++ KIAA0601 653 DAVLCTLPLGVLKQqpPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDR 702 pfwpengdhlfgaykgdlfgllvtdgedlsrggyvldtskssgsapswgr fw++++ lfg++++++ srg+++l+++ + ++ KIAA0601 703 VFWDPSV---------NLFGHVGSTT--ASRGELFLFWNL--Y-----KA 734 gvllsyvlgdaagnreledlsdeellqavledLrkllgsdfedvpdPvta ++ll++v+g+aa +e+ sd+ ++ ++l L++++gs +vp+P+ KIAA0601 735 PILLALVAGEAA--GIMENISDDVIVGRCLAILKGIFGS--SAVPQPK-- 778 gdyvdflvsrWhtdpyargsysyppvgqdsrdrpalrepvgnenn..... +++vsrW +dp+argsysy++ g++++d++ +++p+ ++++ + KIAA0601 779 ----ETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPIT---Pgpsip 821 ....kdgdpglyfAGehtsggypgtveGAveSGlrAArril<-* + ++++ p+l+fAGeht ++yp+tv+GA++SGlr+A ri KIAA0601 822 gapqPI--PRLFFAGEHTIRNYPATVHGALLSGLREAGRIA 860 PF01593.14.ls: domain 1 of 1, from 322 to 860: score 425.5, E = 6.7e-125 *->laGLaAAreLlraGfqdVtvlEArdRvGGRirtvrfkggdadgflie ++GLaAAr+L+++G+ dVt+lEArdRvGGR+ t+r + +++++ KIAA0601 322 VSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKG-----NYVAD 362 lGaqwfhgaypnllnlllelglelglelfpfpgdvflgl.rdg.pypdvp lGa++++ + n ++ ++++ ++el + +++++l+ ++ ++++++ KIAA0601 363 LGAMVVT---GLGGNPMAVVSKQVNMELAKIKQKCPLYEaNGQaVPKEKD 409 gdlppp..............lelel.leepirl.alll.allllapelle ++++++ ++ + ++ +++l++ + + +p++l+++l+ +++l ++++++ KIAA0601 410 EMVEQEfnrlleatsylshqLDFNVlNNKPVSLgQALEvVIQLQEKHVKD 459 ldllsfsdll.aagflelflke............................ + ++ ++ +++l+ +l+ + +++ ++ +++ ++ ++ +++++ + KIAA0601 460 EQIEHWKKIVkTQEELKELLNKmvnlkekikelhqqykeasevkpprdit 509 ................................................lf + ++++++ + ++ ++ +++++ +++ ++ + +++++ ++++ KIAA0601 510 aeflvkskhrdltalckeydelaetqgkleeklqeleanppsdvylssRD 559 rsllagalgflelelsarlallslalfdledgggkfpgggfllplGglpq r++l++++ +le++++++l++lsl+++d++d++ +f g+++++ +G++++ KIAA0601 560 RQILDWHFANLEFANATPLSTLSLKHWDQDDDF-EFTGSHLTVRNGYSCV 608 llaaalgllggrvrlntrVrsirqegdgvtvttedGedgtkgdesetiea ++a+a+gl+ ++lnt Vr++r+ ++g+ v ++ + +++++ +++ KIAA0601 609 PVALAEGLD---IKLNTAVRQVRYTASGCEVIAVNTR---STSQTFIYKC 652 DaVivtvPlgvlkr..hlilflPpLpaakqrairrlgfgsvsKvflefet DaV +t+Plgvlk ++++++f+PpLp++k a++r+gfg+++Kv+l+f++ KIAA0601 653 DAVLCTLPLGVLKQqpPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDR 702 pfwpengdhlfgaykgdlfgllvtdgedlsrggyvldtskssgsapswgr fw++++ lfg++++++ srg+++l+++ + ++ KIAA0601 703 VFWDPSV---------NLFGHVGSTT--ASRGELFLFWNL--Y-----KA 734 gvllsyvlgdaagnreledlsdeellqavledLrkllgsdfedvpdPvta ++ll++v+g+aa +e+ sd+ ++ ++l L++++gs +vp+P+ KIAA0601 735 PILLALVAGEAA--GIMENISDDVIVGRCLAILKGIFGS--SAVPQPK-- 778 gdyvdflvsrWhtdpyargsysyppvgqdsrdrpalrepvgnenn..... +++vsrW +dp+argsysy++ g++++d++ +++p+ ++++ + KIAA0601 779 ----ETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPIT---Pgpsip 821 ....kdgdpglyfAGehtsggypgtveGAveSGlrAArril<-* + ++++ p+l+fAGeht ++yp+tv+GA++SGlr+A ri KIAA0601 822 gapqPI--PRLFFAGEHTIRNYPATVHGALLSGLREAGRIA 860 //