# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj02896s1.fasta.huge -Q ../query/KIAA0594.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0594, 1120 aa vs ./tmplib.23663 library 1986385 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 8.8483+/-0.00835; mu= -3.1404+/- 0.564 mean_var=288.5594+/-69.010, 0's: 0 Z-trim: 12 B-trim: 4 in 1/39 Lambda= 0.075502 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0803 ( 1708 res) hj03049(revised) (1708) 267 44.0 0.00023 >>KIAA0803 ( 1708 res) hj03049(revised) (1708 aa) initn: 187 init1: 88 opt: 267 Z-score: 170.3 bits: 44.0 E(): 0.00023 Smith-Waterman score: 289; 20.883% identity (55.370% similar) in 838 aa overlap (226-988:12-823) 200 210 220 230 240 250 KIAA05 QFLPQDKVGEFAKLSKIELLEATEKSIGPPEMHKYHCELKNLREKEKQL----ETSCKEK ...... ::.: :. .:: : . ::. KIAA08 RKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKES 10 20 30 40 260 270 280 290 300 310 KIAA05 TEYLQKMVQRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEYEEVKLVRDRV : ::.. :.:. .:.:.:.. .. : . . . . .. .. :: .::.. :.. KIAA08 TTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQE-KEVEI--DQL 50 60 70 80 90 320 330 340 350 360 KIAA05 KEEVRKLKEGQIPITC--RIEEMENER-HNLEARIKEKATDIKEASQKC--KQKQDVIER .:.: ::.. :. :: .. : .:: ..::..:. .: :.: ..... ::. KIAA08 NEQVTKLQQ-QLKITTDNKVIEEKNELIRDLETQIECLMSD-----QECVKRNREEEIEQ 100 110 120 130 140 150 370 380 390 400 410 420 KIAA05 KDKHIEELQQALI-VKQNEELDRQR--RIGNTRKMIED--LQNELKTTENCENLQPQIDA .. ::.::: : . :. .. . . ... : : . ..: .. :. . .. KIAA08 LNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTF 160 170 180 190 200 210 430 440 450 460 470 480 KIAA05 ITNDLRRIQDEKALCEGEIIDKRRERETLEKEKKSVDDHI-VRFDNLMNQKEDKLRQRFR . : :.. . . :... .::::..:: .. .. . : .:.: ..:: . . KIAA08 MKNVLKETNFKMNQLTQELFSLKRERESVEKIQSIPENSVNVAIDHL---SKDKPELEVV 220 230 240 250 260 490 500 510 520 530 KIAA05 DTYDAVLWLRNNRDKFKQRVCEPIMLTINMKDNKNAKYIENHIPSNDLRAF-VFESQEDM : ::. :.: . ::. . ::.. .:. . ..::. ... .:: KIAA08 LTEDALKSLEN-QTYFKSFEENGKGSIINLETR--LLQLESTVSAKDLELTQCYKQIKDM 270 280 290 300 310 320 540 550 560 570 580 590 KIAA05 EV---FLKEVRDNKKLRVNAVIAPKSSYADKAPSRSLNELKQYGFFSYLRELFDAPDPVM . : :. ..: . .. .. : . : . . .:. ...:. : . ... .: KIAA08 QEQGQFETEMLQKKIVNLQKIVEEKVA-AALVSQIQLEAVQEYAKFCQDNQTISS-EPER 330 340 350 360 370 380 600 610 620 630 640 650 KIAA05 SYLCCQYHIHEVPVGTEKTRERIERVIQETRLKQIYTAE--EKYVVKTSFYSNKVISSNT . . ...: .:.. . .. :... ...:. :: :. . ..:. .. KIAA08 TNIQNLNQLREDELGSDISALTLRISELESQVVEMHTSLILEKEQVEIA--EKNVLEKEK 390 400 410 420 430 440 660 670 680 690 700 710 KIAA05 SLKVAQFLTVTVDLEQRRHLEEQLKEIHRKLQAVDSGLIALRETS---KHLEHKDNELRQ .: : : . .::.. :.. . .. . . :. : : ..:: : KIAA08 KLLELQKLLEGNEKKQREK-EKKRSPQDVEVLKTTTELFHSNEESGFFNELEALRAESVA 450 460 470 480 490 500 720 730 740 750 760 KIAA05 KKKELLERKTKKRQLEQKISSKLGSLKLMEQDTCNLEEEERKASTKIK------EINVQK : :: : : ..:.... : .. ...: ..... .:. :.. : .::. KIAA08 TKAELASYKEKAEKLQEELLVKETNMTSLQKDLSQVRDHLAEAKEKLSILEKEDETEVQE 510 520 530 540 550 560 770 780 790 800 810 KIAA05 AKLVTELTNL-IKICTSLHIQ-----KVDLILQNTTVISEKNKLESDYMAASSQLRLTE- .: . . : ::. :. : :.. :. .. .. .. . .. :. ..:: KIAA08 SKKACMFEPLPIKLSKSIASQTDGTLKISSSNQTPQILVKNAGIQINLQSECSSEEVTEI 570 580 590 600 610 620 820 830 840 850 860 870 KIAA05 -QHFIELDENRQRLLQKCKELMKRARQVCNLGAEQTLPQEYQTQVPTIPNGHNSSLPMVF ..: : :. :.: . ..: ..:.. . .:: .:. . : . . . ..: :. KIAA08 ISQFTEKIEKMQEL-HAAENLDMESRHISE---TETLKREHYVAVQLLKE-ECGTLKAVI 630 640 650 660 670 880 890 900 910 920 KIAA05 QDL----PNTLDEI---DALLTEERSRASCFTGLNPTIVQEYTK--------REEEIEQL : : ... :. :: :.: .. . . : ... : :: :. KIAA08 QCLRSKEGSSIPELAHSDAYQTREICSSDSGSDWGQGIYLTHSQGFDIASEGRGEESESA 680 690 700 710 720 730 930 940 950 960 KIAA05 TE----ELKG--KKVE--------------LDQYRENISQVKERWLNPLKELVEKINEKF :. ..:: . :. : ..:.::.: ::. : .. :. .. KIAA08 TDSFPKKIKGLLRAVHNEGMQVLSLTESPYSDGEDHSIQQVSESWLEERKAYINTIS-SL 740 750 760 770 780 790 970 980 990 1000 1010 1020 KIAA05 SNFFSSMQCAGEVDLH--TENEEDYDKYGIRIRVKFRSSTQLHELTPHHQSGGERSVSTM ......:: :.... ....:... . KIAA08 KDLITKMQLQREAEVYDSSQSHESFSDWRGELLLALQQVFLEERSVLLAAFRTELTALGT 800 810 820 830 840 850 1120 residues in 1 query sequences 1986385 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:08:26 2008 done: Thu Dec 18 15:08:27 2008 Total Scan time: 0.690 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]