hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07272864/chunk_1/iprscan-20080502-07272864.nocrc
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Query sequence: KIAA0591
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00129                                                 590.9   4.6e-173   1
SM00233                                                  63.2    3.3e-14   1
SM00240                                                  31.7    9.9e-05   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00129     1/1      36   395 ..     1   404 []   590.9 4.6e-173
SM00240     1/1     588   645 ..     1    49 []    31.7  9.9e-05
SM00233     1/1    1735  1834 ..     1    82 []    63.2  3.3e-14

Alignments of top-scoring domains:
SM00129: domain 1 of 1, from 36 to 395: score 590.9, E = 4.6e-173
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv....tvtvn...
                        +++VavRv   RP+n rE+s +    s++++++++++t ++n+++
    KIAA0591    36    GASVKVAVRV---RPFNSRETSKE----SKCIIQMqgnsTSIINpkn 75   

                   .......FtFDkVFW....rydvddpsasQedVFeevaaPLvdsaldGYN
                   +++ +++F+FD+++W+++++  +d+ +asQ  V+++++++++ +a+ GYN
    KIAA0591    76 pkeapksFSFDYSYWshtsP--EDPCFASQNRVYNDIGKEMLLHAFGGYN 123  

                   vaTIFAYGQTGSGKTyTMsGtptdpgilsndladitpdepGiIPRaledl
                   v +IFAYGQTG+GK+yTM+G  ++              ++GiIP  +e+l
    KIAA0591   124 V-CIFAYGQTGAGKSYTMMGKQEE-------------SQAGIIPQLCEEL 159  

                   Fekide.......fsVkvSylEIYNEkirDLLspspenSksrGkhakqss
                   Feki+++ +++ ++sV+vSy+EIY+E++rDLL+p++              
    KIAA0591   160 FEKINDncneemsYSVEVSYMEIYCERVRDLLNPKN-------------- 195  

                   kkkLrirEdkngnrhdapkLtrlrgqggvyVvGLtevsVsSaeevlelle
                   k++Lr+rE++                 g+yV++L+   V+S+ ++ +l++
    KIAA0591   196 KGNLRVREHPL---------------LGPYVEDLSKLAVTSYTDIADLMD 230  

                   rGnknRtvaaTkmNeeSSRSHaiFtitleqkeklepiadektesstnegt
                    Gnk RtvaaT+mNe SSRSHa+Fti+ +qk            +  +   
    KIAA0591   231 AGNKARTVAATNMNETSSRSHAVFTIVFTQK-----------KHDNETNL 269  

                   eqiksskLnLVDLAGSERaskTgseaeGdRLkEaqnINkSLlaLGnVInA
                   ++ k+sk++LVDLAGSERa++Tg  a G RLkE++nINkSL++LG+VI+A
    KIAA0591   270 STEKVSKISLVDLAGSERADSTG--AKGTRLKEGANINKSLTTLGKVISA 317  

                   Laddshdsaes.eatkqaggkss.HIPYRDSKLTrLLQdSLGGNsKTlMI
                   La+      + +  +k++++k++++IPYRDS+LT+LL++ LGGNs+T+M+
    KIAA0591   318 LAE------VDnCTSKSKKKKKTdFIPYRDSVLTWLLRENLGGNSRTAMV 361  

                   anvSPsssnyeETlsTLrFAsRaksIknkpavne<-*
                   a +SP+++ny+ETlsTLr+A+Rak+Ik+++++ne   
    KIAA0591   362 AALSPADINYDETLSTLRYADRAKQIKCNAVINE    395  

SM00240: domain 1 of 1, from 588 to 645: score 31.7, E = 9.9e-05
                   *->tvtiGRss....cdivlpspsiSRrHaeiv..dgd......yliDlg
                       +++G +  +++ divl+++ i  +H++++++++++++    l+++ 
    KIAA0591   588    ITRVGQADaerrQDIVLSGAHIKEEHCIFRseRSNsgevivTLEPCE 634  

                   enSsNGTfVNgrrv<-*
                      +  T+VNg+rv   
    KIAA0591   635 ---RSETYVNGKRV    645  

SM00233: domain 1 of 1, from 1735 to 1834: score 63.2, E = 3.3e-14
                   *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk...kpkgsipLs
                      v k+G+L+ k++  ++w k+++v+++ ++++y s++++  +g+i+Ls
    KIAA0591  1735    VSKKGYLHFKEplYsNWAKHFVVVRRPYVFIYNSDkdpVERGIINLS 1781 

                   gcsvre.p..........cFeivt.drtlllqAeseeereeWvealqsai
                   +++v+ +++     + +++F ++t++r  llqA +++++++W+ a++ ++
    KIAA0591  1782 TAQVEYsEdqqamvktpnTFAVCTkHRGVLLQALNDKDMNDWLYAFNPLL 1831 

                   aka<-*
                   a     
    KIAA0591  1832 AGT    1834 

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