hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07272864/chunk_1/iprscan-20080502-07272864.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0591 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00225.13.ls Kinesin motor domain 583.9 1.4e-172 1 PF00225.13.fs Kinesin motor domain 582.2 4.5e-172 1 PF00169.19.fs PH domain 71.9 2e-21 1 PF00169.19.ls PH domain 73.9 4.6e-19 1 PF00498.16.fs FHA domain 50.7 2.3e-14 1 PF00498.16.ls FHA domain 52.4 1.4e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00225.13.ls 1/1 44 388 .. 1 424 [] 583.9 1.4e-172 PF00225.13.fs 1/1 44 388 .. 1 424 [] 582.2 4.5e-172 PF00498.16.fs 1/1 589 660 .. 1 94 [] 50.7 2.3e-14 PF00498.16.ls 1/1 589 660 .. 1 94 [] 52.4 1.4e-12 PF00169.19.fs 1/1 1735 1832 .. 1 92 [] 71.9 2e-21 PF00169.19.ls 1/1 1735 1832 .. 1 92 [] 73.9 4.6e-19 Alignments of top-scoring domains: PF00225.13.ls: domain 1 of 1, from 44 to 388: score 583.9, E = 1.4e-172 *->RvRPlnerEksrgssdvvnv..sedvessvitn.gkektFtFDkVFd RvRP+n+rE+s+ s++++++++ ++ ++++++ ++ +k+F+FD+ ++ KIAA0591 44 RVRPFNSRETSKESKCIIQMqgNSTSIINPKNPkEAPKSFSFDYSYW 90 peatQelse.p.YAsqefvyestakplvesvleGyNvtIFAYGQTGSGKT ++++ e+p +Asq vy++++k+++ +++ GyNv+IFAYGQTG+GK+ KIAA0591 91 SHTSP---EdPcFASQNRVYNDIGKEMLLHAFGGYNVCIFAYGQTGAGKS 137 YTMeGstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkpv YTM+G+ + e+++GiiP +e+lFe+i +++++ KIAA0591 138 YTMMGKQE---------------ESQAGIIPQLCEELFEKI-NDNCN--- 168 fKPklnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIY e++++sv+vSy+EIY KIAA0591 169 -----------------------------------EEMSYSVEVSYMEIY 183 NEkirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGL +E++rDLL+p+ +k + Lr+re+p G +yV++L KIAA0591 184 CERVRDLLNPK-------------NKGN-LRVREHPLLG-----PYVEDL 214 teveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntd + Vts+ ++ +l++ Gnk Rtva+T+mNe+SSRSHa+Fti+ +q+ +d KIAA0591 215 SKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKHD 264 ttgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaa ++++ +t+ +vsk++LVDLAGSERa+ Tg A g RLkE+a KIAA0591 265 NETNLSTE---------KVSKISLVDLAGSERADSTG---AKGTRLKEGA 302 nINkSLsaLGnVInALadnq..........kssHiPYRDSKLTrLLQDSL nINkSL +LG+VI+ALa+ + ++++++++k ++iPYRDS+LT+LL++ L KIAA0591 303 NINKSLTTLGKVISALAEVDnctskskkkkKTDFIPYRDSVLTWLLRENL 352 GGGDNsKTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-* GG Ns+T+M+a +SP++ ny+ETLsTLr+A+RAK+Ik KIAA0591 353 GG--NSRTAMVAALSPADI----NYDETLSTLRYADRAKQIK 388 PF00225.13.fs: domain 1 of 1, from 44 to 388: score 582.2, E = 4.5e-172 *->RvRPlnerEksrgssdvvnv..sedvessvitn.gkektFtFDkVFd RvRP+n+rE+s+ s++++++++ ++ ++++++ ++ +k+F+FD+ ++ KIAA0591 44 RVRPFNSRETSKESKCIIQMqgNSTSIINPKNPkEAPKSFSFDYSYW 90 peatQelse.p.YAsqefvyestakplvesvleGyNvtIFAYGQTGSGKT ++++ e+p +Asq vy++++k+++ +++ GyNv+IFAYGQTG+GK+ KIAA0591 91 SHTSP---EdPcFASQNRVYNDIGKEMLLHAFGGYNVCIFAYGQTGAGKS 137 YTMeGstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkpv YTM+G+ + e+++GiiP +e+lFe+i +++++ KIAA0591 138 YTMMGKQE---------------ESQAGIIPQLCEELFEKI-NDNCN--- 168 fKPklnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIY e++++sv+vSy+EIY KIAA0591 169 -----------------------------------EEMSYSVEVSYMEIY 183 NEkirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGL +E++rDLL+p+ +k + Lr+re+p G +yV++L KIAA0591 184 CERVRDLLNPK-------------NKGN-LRVREHPLLG-----PYVEDL 214 teveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntd + Vts+ ++ +l++ Gnk Rtva+T+mNe+SSRSHa+Fti+ +q+ +d KIAA0591 215 SKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKHD 264 ttgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaa ++++ +t+ +vsk++LVDLAGSERa+ Tg A g RLkE+a KIAA0591 265 NETNLSTE---------KVSKISLVDLAGSERADSTG---AKGTRLKEGA 302 nINkSLsaLGnVInALadnq..........kssHiPYRDSKLTrLLQDSL nINkSL +LG+VI+ALa+ + ++++++++k ++iPYRDS+LT+LL++ L KIAA0591 303 NINKSLTTLGKVISALAEVDnctskskkkkKTDFIPYRDSVLTWLLRENL 352 GGGDNsKTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-* GG Ns+T+M+a +SP++ ny+ETLsTLr+A+RAK+Ik KIAA0591 353 GG--NSRTAMVAALSPADI----NYDETLSTLRYADRAKQIK 388 PF00498.16.fs: domain 1 of 1, from 589 to 660: score 50.7, E = 2.3e-14 *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf +++G + ++ qdi+l+g +i +H+ ++ + g ++ KIAA0591 589 TRVGQ------ADAERRQDIVLSGaHIKEEHCIFRSERSNSGEVIV- 628 rpaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<- +l++++ + t+vNgkr+ ++pv+L+sG++i +G KIAA0591 629 ----------TLEPCERSE----TYVNGKRV--SQPVQLRSGNRIIMG 660 * KIAA0591 - - PF00498.16.ls: domain 1 of 1, from 589 to 660: score 52.4, E = 1.4e-12 *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf +++G + ++ qdi+l+g +i +H+ ++ + g ++ KIAA0591 589 TRVGQ------ADAERRQDIVLSGaHIKEEHCIFRSERSNSGEVIV- 628 rpaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<- +l++++ + t+vNgkr+ ++pv+L+sG++i +G KIAA0591 629 ----------TLEPCERSE----TYVNGKRV--SQPVQLRSGNRIIMG 660 * KIAA0591 - - PF00169.19.fs: domain 1 of 1, from 1735 to 1832: score 71.9, E = 2e-21 *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk.kkpkgsipLs v k+G+L+ k++ ++w k+++v+++ + ++y ++k+ +g+i+Ls KIAA0591 1735 VSKKGYLHFKEpLYSNWAKHFVVVRRPYVFIYNSDKdPVERGIINLS 1781 giqvtkvpdn....krkncFeirt.dretlllqaeseeerkeWvkaiqsa ++qv++ +d++ k +n+F + t++r +llqa +++++++W+ a++ + KIAA0591 1782 TAQVEYSEDQqamvKTPNTFAVCTkHR-GVLLQALNDKDMNDWLYAFNPL 1830 ir<-* ++ KIAA0591 1831 LA 1832 PF00169.19.ls: domain 1 of 1, from 1735 to 1832: score 73.9, E = 4.6e-19 *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk.kkpkgsipLs v k+G+L+ k++ ++w k+++v+++ + ++y ++k+ +g+i+Ls KIAA0591 1735 VSKKGYLHFKEpLYSNWAKHFVVVRRPYVFIYNSDKdPVERGIINLS 1781 giqvtkvpdn....krkncFeirt.dretlllqaeseeerkeWvkaiqsa ++qv++ +d++ k +n+F + t++r +llqa +++++++W+ a++ + KIAA0591 1782 TAQVEYSEDQqamvKTPNTFAVCTkHR-GVLLQALNDKDMNDWLYAFNPL 1830 ir<-* ++ KIAA0591 1831 LA 1832 //