hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07223052/chunk_1/iprscan-20080502-07223052.nocrc
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Query sequence: KIAA0588
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                 440.1   1.2e-127   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/6      51   137 ..     1   121 []     2.7      1.3
SM00112    2/6     161   246 ..     1   121 []    81.9  7.9e-20
SM00112    3/6     270   351 ..     1   121 []    94.4  1.3e-23
SM00112    4/6     375   456 ..     1   121 []    95.1    8e-24
SM00112    5/6     480   566 ..     1   121 []    99.6  3.6e-25
SM00112    6/6     597   675 ..     1   121 []    66.3  3.9e-15

Alignments of top-scoring domains:
SM00112: domain 1 of 6, from 51 to 137: score 2.7, E = 1.3
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
                      v  + +D g   e  +      +  + ++  ++++++lF+++p++G 
    KIAA0588    51    VGDISRDLG--LEPRE------LAERGVRiiprgrtqLFALNPRSG- 88   

                   ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg
                              ++t++++DREe +         + +L +   D+      
    KIAA0588    89 ----------SLVTAGRIDREELCMGAIK---CQLNLDILMEDKVK---- 121  

                   dssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                      v v+V D+NDNaP   
    KIAA0588   122 -------------IY---GVEVEVRDINDNAP    137  

SM00112: domain 2 of 6, from 161 to 246: score 81.9, E = 7.9e-20
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                       +A D+D g    N+        +Y+++++++ +l   +   G ++p
    KIAA0588   161    PHAWDPDIG---KNSL------QSYELSPnthfsLIVQNGADGSKYP 198  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          +++++++LDREe+         + ++L+ +A+DgG p      
    KIAA0588   199 -------ELVLKRALDREEK---------AAHHLVLTASDGGDPV----- 227  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             +++ta ++v VlD NDNaP   
    KIAA0588   228 ----------RTGTARIRVMVLDANDNAP    246  

SM00112: domain 3 of 6, from 270 to 351: score 94.4, E = 1.3e-23
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.......lFsIdpetGtn
                      v+AtD+D+g    N++      v+Ys+   +++  + F++d ++G  
    KIAA0588   270    VNATDPDEG---VNAE------VRYSFRYvddkaaqVFKLDCNSG-- 305  

                   gpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgd
                            +i+t ++LD+Ee            Y+++v+A+D++g     
    KIAA0588   306 ---------TISTIGELDHEES---------GFYQMEVQAMDNAG----- 332  

                   ssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                s+ a v +tVlDvNDNaP   
    KIAA0588   333 ------------YSARAKVLITVLDVNDNAP    351  

SM00112: domain 4 of 6, from 375 to 456: score 95.1, E = 8e-24
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      +++ D Ds+   eNg+      v + i ++ +F+++++ G+      
    KIAA0588   375    LNVNDQDSE---ENGQ------VICFIQGnlPFKLEKSYGN------ 406  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     ++ ++t   LDRE+          ++Y++tv+AtD+G+pp        
    KIAA0588   407 --YYSLVTDIVLDREQV---------PSYNITVTATDRGTPP-------- 437  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          ls+++ +  +V D NDN+P   
    KIAA0588   438 -------LSTETHISLNVADTNDNPP    456  

SM00112: domain 5 of 6, from 480 to 566: score 99.6, E = 3.6e-25
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      v+A+D+D +   eN++      +tYs+ +++ ++ + +++ sI+++t
    KIAA0588   480    VTAHDPDCE---ENAQ------ITYSLAEntiqgaslssYVSINSDT 517  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G           +++++ ++D+E+             +++v A+D+G pp
    KIAA0588   518 G-----------VLYALSSFDYEQF---------RDLQVKVMARDNGHPP 547  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  lss++++  +VlD+NDNaP   
    KIAA0588   548 ---------------LSSNVSLSLFVLDQNDNAP    566  

SM00112: domain 6 of 6, from 597 to 675: score 66.3, E = 3.9e-15
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      v+A+D+Dsg   +N++      ++Y++l  ++++lFs+  +tG    
    KIAA0588   597    VVAVDRDSG---QNAW------LSYRLLKasepgLFSVGLHTG---- 630  

                   sLvkleiiittt.kpLDREeqflkreqtdeseYtLtveAtDgGgpppgds
                          +++t+++ LDR++          +  +L+v ++D+G+pp    
    KIAA0588   631 -------EVRTArALLDRDAL---------K-QSLVVAVQDHGQPP---- 659  

                   sptrksqqtpplsstatvtvtVlDvNDNaP<-*
                              ls+t+t+tv V D     P   
    KIAA0588   660 -----------LSATVTLTVAVAD---SIP    675  

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