hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07040558/chunk_1/iprscan-20080502-07040558.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0579 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00343 29.7 0.0004 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00343 1/1 868 884 .. 1 17 [] 29.7 0.0004 Alignments of top-scoring domains: SM00343: domain 1 of 1, from 868 to 884: score 29.7, E = 0.0004 *->kCynCGkeGHiardCpk<-* CynCG +GH+a dC++ KIAA0579 868 SCYNCGATGHRAQDCKQ 884 //