# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/bg00015.fasta.huge -Q ../query/KIAA0579.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0579, 910 aa vs ./tmplib.23663 library 1986595 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 9.7115+/-0.0093; mu= -2.7959+/- 0.632 mean_var=408.3026+/-100.808, 0's: 0 Z-trim: 2 B-trim: 24 in 1/39 Lambda= 0.063472 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1744 ( 855 res) pj01516 ( 855) 545 64.6 5.8e-11 >>KIAA1744 ( 855 res) pj01516 (855 aa) initn: 691 init1: 262 opt: 545 Z-score: 288.7 bits: 64.6 E(): 5.8e-11 Smith-Waterman score: 798; 26.609% identity (54.077% similar) in 932 aa overlap (31-910:3-855) 10 20 30 40 50 KIAA05 GPGGALPTCPACHKITPRTEAPVSSVSNSLENALHTSAHSTEESLPKRPL-GKHSKVSVE :..: .: ...: : ... : .: KIAA17 NNESSLIEQAPIPQDGLTVAPHRAQREAVHIE 10 20 30 60 70 80 90 100 110 KIAA05 KIDLKGLSHTKNDRNVECSFEVLWSDSSITSVTKSSSEVTEFISKLCQLYPEENLEKLI- :: :::... . :. : .:.: ::: :.:.:::. .:. ::. :: . :...: : KIAA17 KIMLKGVQRKRADKYWEYTFKVNWSDLSVTTVTKTHQELQEFLLKLPKELSSETFDKTIL 40 50 60 70 80 90 120 130 140 150 160 170 KIAA05 PCLAGPDAFYVERNHVDLDSGLRYLASLPSHV-LKNDHVRRFLSTSSPPQQLQSPSPGNP : . :: : ::. :: : : :.. :....:. :... : ..:.: . . KIAA17 RALNQGSLKREERRHPDLEPILRQLFSSSSQAFLQSQKVHSFFQSISS-DSLHSINNLQS 100 110 120 130 140 150 180 190 200 210 220 230 KIAA05 SLSKVGTVMGVSGRPVCGVAGIPSSQSGAQHHG--QHPAGSAAPLPHCSHAGSAGSALAY :: :.. .. . ::....:.. :: . : .:.:. : .. KIAA17 SL-KTSKILEHLKED--------SSEASSQEEDVLQHA------IIHKKHTGK--SPIVN 160 170 180 190 240 250 260 270 280 290 KIAA05 RTQMDTSPAILMPSSLQTPQTQEQNGILDWLRKLRLHKYYPVFKQLSMEKFLSLTEEDLN . :: ..: : : .:::::.:: .. .: :. .. ... KIAA17 NIGTSCSPL----DGL-TMQYSEQNGIVDWRKQSCTTIQHP-------EHCVTSADQHSA 200 210 220 230 240 300 310 320 330 340 350 KIAA05 KFESLTMGAKKKLKTQLELEKEKSERRCLNPSAPPLVTSSGVARVPPTSHVGPVQSGRGS . .::. ::: : : : :: :. :: . :. : .: : :. KIAA17 EKRSLSSINKKKGKPQTEKEKIKKTDNRLNSRINGIRLST-----PQHAHGGTVK----- 250 260 270 280 290 360 370 380 390 400 410 KIAA05 HAAELRVEVEQPHHQLPREGSSSEYSSSSSSPMGVQAREESSDSAEENDRRVEIHLESSD .. ... . : . .::: :: ::: . .:: .: ::.:: .. . :.: KIAA17 ---DVNLDIGSGHDTCGE--TSSESYSSPSSPR--HDGRESFESEEEKDRDTDSNSEDSG 300 310 320 330 340 420 430 440 450 460 KIAA05 KEKPVMLLNHFT---SSSARPTAQVLPVQNEASS-------NPSGHHP--LPPQMLSAAS . . . . .. . . ...: .:. . :: .. .:. .: .: . KIAA17 NPSTTRFTGYGSVNQTVTVKPPVQIASLGNENGNLLEDPLNSPKYQHISFMPTLHCVMHN 350 360 370 380 390 400 470 480 490 500 510 KIAA05 HITPIRMLNSVHKPERGSADMKLLSSSVHSLLSLEERNKGS-----GPRSSMKVDKSFGS ... . :: :.. :. : : .. ...: ... :: . ... KIAA17 GAQKSEVVVPAPKPADGKTIGMLVPSPV-AISAIRESANSTPVGILGPTACTGESEKHLE 410 420 430 440 450 460 520 530 540 550 560 KIAA05 AMMDVLP--------ASAP--HQPVQVLS-----GLSESSSMS-PTVSFGPRTKVVHAST . . :: .:.: : :: :. : ::: ... : : . . .. KIAA17 LLASPLPIPSTFLPHSSTPALHLTVQRLKLPPPQGSSESCTVNIPQQPPGSLSIASPNTA 470 480 490 500 510 520 570 580 590 600 610 620 KIAA05 LDRVLKTAQQPALVVETSTAATGTPSTVLHAARPPIKLLLSSSVPADSAISGQTSCPNNV . . . .. :. : :. : . : :. :.. :: . .: . :.:: KIAA17 FIPIHNPGSFPGSPVATTDPITKSASQVVG---------LNQMVPQIEGNTGTVPQPTNV 530 540 550 560 570 630 640 650 660 670 KIAA05 QISVPPAIINPRTALYTANTKVAFSAMSSMPVGPLQGGFCANSN-----TASPSSHPSTS .. .: : .: .:. ... .: .:: .: ..: ::. : .:... KIAA17 KVVLPAA------GLSAAQPPASYP----LPGSPLAAGVLPSQNSSVLSTAATSPQPASA 580 590 600 610 620 680 690 700 710 720 730 KIAA05 FANMATLPSCPA-PSSSPALSSVPESSFYSSSGGGGSTGNIPA-SNPNHHHHHHHQQPPA ..: :: :. .:. . : .. :.. . ::. : : .: : . . KIAA17 GISQAQATVPPAVPTHTPGPAPSPSPALTHSTAQSDSTSYISAVGNTNANG------TVV 630 640 650 660 670 740 750 760 770 780 790 KIAA05 PPQPAPPPPGCIVCTSCGCSGSCGSSGLTVSYANYFQHPFSGPSVFTFP-FLPFSPMCSS ::: : : ::: :::..: . :. .:. :: .. : :. . .:.. KIAA17 PPQQMGSGP----CGSCGRRCSCGTNGNLQLNSYYYPNPMPGP-MYRVPSFFTLPSICNG 680 690 700 710 720 730 800 810 820 830 840 850 KIAA05 GYVSAQQYGGGSTFPVV--HAPYSSSGTPDPVLSGQSTFAVPPMQNFMAGTAGVYQTQGL .:.. . ..:. .: ..::... . :::...:..... : .: . :: . .. KIAA17 SYLNQAHQSNGNQLPFFLPQTPYANGLVHDPVMGSQANYGMQQMAGF-GRFYPVYPAPNV 740 750 760 770 780 790 860 870 880 890 900 KIAA05 VGSSNGSSHKKSGNLSCYNCGATGHRAQDCKQPSMDFNRPGTFRLKYAPP----AESLDS :....::. ::.::.::::::..:: :::::: ::. :. ::.::.:::: ..::: KIAA17 VANTSGSGPKKNGNVSCYNCGVSGHYAQDCKQSSMEANQQGTYRLRYAPPLPPSNDTLDS 800 810 820 830 840 850 910 KIAA05 TD .: KIAA17 AD 910 residues in 1 query sequences 1986595 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:07:49 2008 done: Thu Dec 18 15:07:50 2008 Total Scan time: 0.640 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]