hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06463024/chunk_1/iprscan-20080502-06463024.nocrc
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Query sequence: KIAA0569
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         192.4    9.9e-55   8
PF00096.16.fs Zinc finger, C2H2 type                         183.2    5.9e-52   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls   1/8     315   338 ..     1    24 []    26.3   0.0001
PF00096.16.fs   1/8     315   338 ..     1    24 []    24.3  8.2e-05
PF00096.16.fs   2/8     345   367 ..     1    24 []    27.5  1.3e-05
PF00096.16.ls   2/8     345   367 ..     1    24 []    29.5  1.1e-05
PF00096.16.fs   3/8     386   408 ..     1    24 []    30.5  2.4e-06
PF00096.16.ls   3/8     386   408 ..     1    24 []    32.4  1.4e-06
PF00096.16.ls   4/8     414   438 ..     1    24 []    23.1  0.00095
PF00096.16.fs   6/8    1103  1125 ..     1    24 []    23.6  0.00013
PF00096.16.ls   6/8    1103  1125 ..     1    24 []    25.5  0.00017
PF00096.16.ls   7/8    1131  1153 ..     1    24 []    23.2  0.00084

Alignments of top-scoring domains:
PF00096.16.ls: domain 1 of 8, from 315 to 338: score 26.3, E = 0.0001
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       +Cp +C++ ++r  +Lk H++ +H   
    KIAA0569   315    LTCP-YCDRGYKRLTSLKEHIKYrH    338  

PF00096.16.fs: domain 1 of 8, from 315 to 338: score 24.3, E = 8.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       +Cp +C++ ++r  +Lk H++ +H   
    KIAA0569   315    LTCP-YCDRGYKRLTSLKEHIKYrH    338  

PF00096.16.fs: domain 2 of 8, from 345 to 367: score 27.5, E = 1.3e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++Cp  C ++F  + +L+rH+ tH   
    KIAA0569   345    FSCP-LCSYTFAYRTQLERHMVTH    367  

PF00096.16.ls: domain 2 of 8, from 345 to 367: score 29.5, E = 1.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++Cp  C ++F  + +L+rH+ tH   
    KIAA0569   345    FSCP-LCSYTFAYRTQLERHMVTH    367  

PF00096.16.fs: domain 3 of 8, from 386 to 408: score 30.5, E = 2.4e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +Cgk+F+ k++Lk Hlr+H   
    KIAA0569   386    FKCT-ECGKAFKYKHHLKEHLRIH    408  

PF00096.16.ls: domain 3 of 8, from 386 to 408: score 32.4, E = 1.4e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +Cgk+F+ k++Lk Hlr+H   
    KIAA0569   386    FKCT-ECGKAFKYKHHLKEHLRIH    408  

PF00096.16.ls: domain 4 of 8, from 414 to 438: score 23.1, E = 0.00095
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                      y+Cp  C+k+Fs+++++ +H+ ++++   
    KIAA0569   414    YECP-NCKKRFSHSGSYSSHISSkkC    438  

PF00096.16.fs: domain 6 of 8, from 1103 to 1125: score 23.6, E = 0.00013
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+  C+k+F  +s+L rH+  H   
    KIAA0569  1103    YACD-LCDKTFQKSSSLLRHKYEH    1125 

PF00096.16.ls: domain 6 of 8, from 1103 to 1125: score 25.5, E = 0.00017
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+  C+k+F  +s+L rH+  H   
    KIAA0569  1103    YACD-LCDKTFQKSSSLLRHKYEH    1125 

PF00096.16.ls: domain 7 of 8, from 1131 to 1153: score 23.2, E = 0.00084
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C+k+F++k++L  H r H   
    KIAA0569  1131    HQCQ-ICKKAFKHKHHLIEHSRLH    1153 

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