# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh02110.fasta.huge -Q ../query/KIAA0567.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0567, 978 aa
 vs ./tmplib.23663 library

1986527 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.6083+/-0.00565; mu= 13.0080+/- 0.384
 mean_var=114.1543+/-27.767, 0's: 0 Z-trim: 2  B-trim: 80 in 1/39
 Lambda= 0.120041

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0820  ( 892 res)   bg00036                     ( 892)  372 76.1 2.1e-14


>>KIAA0820  ( 892 res)   bg00036                          (892 aa)
 initn: 296 init1: 183 opt: 372  Z-score: 350.3  bits: 76.1 E(): 2.1e-14
Smith-Waterman score: 373;  23.447% identity (56.914% similar) in 499 aa overlap (275-758:36-507)

          250       260       270       280       290       300    
KIAA05 LKYQRILERLEKENKELRKLVLQKDDKGIHHRKLKKSLIDMYSEVLDVLSDYDASYNTQD
                                     .:.... :: . ... :..:    :   . 
KIAA08 SSQGSAAPTPCQVVEASRDQLVAGPSGKMGNREMEE-LIPLVNRLQDAFSALGQSCLLE-
          10        20        30        40         50        60    

          310       320       330       340       350       360    
KIAA05 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSR
        ::...::: :::::.:::: ..   ..::::: ..:: :. . :  .  . : :   . 
KIAA08 -LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVTSKAEYAEFLHCKG
             70        80        90        100       110       120 

          370       380       390       400       410       420    
KIAA05 EFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTV
       .    :  :.  .: ::: .  . .  .  .:   :.: : .: .  ..:.::::. .. 
KIAA08 K----KFTDFDEVRLEIEAETDRVTGMNKGISSIPINLRVYSPHVLNLTLIDLPGITKVP
                 130       140       150       160       170       

          430       440       450       460       470       480    
KIAA05 TSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVL
       .. . :: .  :  .   ..   : .:: .  ...:   : .  :....::.: ::: :.
KIAA08 VGDQPPDIEYQIREMIMQFITRENCLILAVTPANTDLANSDALKLAKEVDPQGLRTIGVI
       180       190       200       210       220       230       

          490       500       510       520          530       540 
KIAA05 TKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG---NSSESIEAIREYEEEFF
       ::.:: .... .    ....:.::.:..  :: .::. .    .....:.:    :..::
KIAA08 TKLDLMDEGTDA----RDVLENKLLPLRR-GYVGVVNRSQKDIDGKKDIKAAMLAERKFF
       240           250       260        270       280       290  

                550         560       570             580       590
KIAA05 QNS---KLLKTSMLKAH--QVTTRNLSLAVSDCFWKMVRE------SVEQQADSFKATRF
        .    . .   :   :  .: ...:.  . : . ..  .      :.:......:   :
KIAA08 LSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNFRNKLQGQLLSIEHEVEAYKN--F
            300       310       320       330       340         350

              600       610        620       630       640         
KIAA05 NLETEWKNNYPRLRELDRNEL-FEKAKNEILDEVISLSQVTPKHWEEILQQSLWERVSTH
       . :   ...   :. ...  . :::  .   :.: .:      . ..:..    ::   .
KIAA08 KPEDPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTLELSGGAKINRIFH----ERFPFE
              360       370       380       390       400          

     650       660       670       680       690       700         
KIAA05 VIENIYLPAAQTMNSGTFNTTVDIKLKQWTDKQLPNKAVEVAWETLQEEFSRFMTEPKGK
       ...       . .:   .   ..  .:.    .    . ..:.:.. ..    .  :. :
KIAA08 IVK-------MEFNEKELRREISYAIKNIHGIRTGLFTPDMAFEAIVKKQIVKLKGPSLK
               410       420       430       440       450         

     710       720       730       740       750       760         
KIAA05 EHDDIFDKLKEAVKEESIKRHKWNDFAEDSLRVIQHNALEDRSISDKQQWDAAIYFMEEA
         : ....: ..::. . :  ..  . :.. :..  : ...:  . :.:           
KIAA08 SVDLVIQELINTVKKCTKKLANFPRLCEETERIVA-NHIREREGKTKDQVLLLIDIQVSY
     460       470       480       490        500       510        

     770       780       790       800       810       820         
KIAA05 LQARLKDTENAIENMVGPDWKKRWLYWKNRTQEQCVHNETKNELEKMLKCNEEHPAYLAS
                                                                   
KIAA08 INTNHEDFIGFANAQQRSSQVHKKTTVGNQVIRKGWLTISNIGIMKGGSKGYWFVLTAES
      520       530       540       550       560       570        




978 residues in 1 query   sequences
1986527 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:07:19 2008 done: Thu Dec 18 15:07:19 2008
 Total Scan time:  0.660 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]