hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06344889/chunk_1/iprscan-20080502-06344889.nocrc
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Query sequence: KIAA0563
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00369                                                  56.0    4.7e-12   4

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00369     1/4     910   929 ..     1    24 []     6.5       67
SM00369     2/4     930   953 ..     1    24 []    24.8    0.012
SM00369     3/4     954   977 ..     1    24 []    14.6      6.9
SM00369     4/4     981  1005 ..     1    24 []    10.2       24

Alignments of top-scoring domains:
SM00369: domain 1 of 4, from 910 to 929: score 6.5, E = 67
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                          ++L L  N+Lt+L+ + F+g   
    KIAA0563   910    ----EKLILRENNLTELHKDSFEG    929  

SM00369: domain 2 of 4, from 930 to 953: score 24.8, E = 0.012
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +L+ LdLs N+++s+ + +F++   
    KIAA0563   930    LLSLQYLDLSCNKIQSIERHTFEP    953  

SM00369: domain 3 of 4, from 954 to 977: score 14.6, E = 6.9
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      Lp L+  +Ls N +t+L  g+Fq    
    KIAA0563   954    LPFLKFINLSCNVITELSFGTFQA    977  

SM00369: domain 4 of 4, from 981 to 1005: score 10.2, E = 24
                   *->LpnLreLdLsnNqLtsLP.pgaFqg<-*
                      +  L +L L++N Lt++ +p +F     
    KIAA0563   981    MQFLHKLILNHNPLTTVEdPYLFKL    1005 

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