hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06344889/chunk_1/iprscan-20080502-06344889.nocrc
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Query sequence: KIAA0563
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                             44.2    4.1e-10   5
PF00560.23.fs Leucine Rich Repeat                             38.2    2.1e-09   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.fs   3/5     932   954 ..     1    24 []    16.5   0.0018
PF00560.23.ls   3/5     932   954 ..     1    24 []    18.4    0.024
PF00560.23.ls   4/5     956   978 ..     1    24 []     9.4      4.5
PF00560.23.ls   5/5     983  1005 ..     1    24 []     9.1      5.2

Alignments of top-scoring domains:
PF00560.23.fs: domain 3 of 5, from 932 to 954: score 16.5, E = 0.0018
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L++LdLs+ N +++ s++ ++++ l   
    KIAA0563   932    SLQYLDLSC-N-KIQ-SIERHtFePL    954  

PF00560.23.ls: domain 3 of 5, from 932 to 954: score 18.4, E = 0.024
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L++LdLs+ N +++ s++ ++++ l   
    KIAA0563   932    SLQYLDLSC-N-KIQ-SIERHtFePL    954  

PF00560.23.ls: domain 4 of 5, from 956 to 978: score 9.4, E = 4.5
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       L+ ++Ls+ N  +t +l+ ++++     
    KIAA0563   956    FLKFINLSC-N-VIT-ELSFGtFqAW    978  

PF00560.23.ls: domain 5 of 5, from 983 to 1005: score 9.1, E = 5.2
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       L +L L++ N +lt ++++  l +l   
    KIAA0563   983    FLHKLILNH-N-PLT-TVEDPyLfKL    1005 

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