hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06280440/chunk_1/iprscan-20080502-06280440.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0559
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00168.20.fs C2 domain                                      119.7    4.8e-35   1
PF00168.20.ls C2 domain                                      121.7    1.9e-33   1
PF00595.14.fs PDZ domain (Also known as DHR or GLGF)          42.1    3.7e-11   1
PF00595.14.ls PDZ domain (Also known as DHR or GLGF)          44.1    4.5e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00595.14.fs   1/1     779   864 ..     1    86 []    42.1  3.7e-11
PF00595.14.ls   1/1     779   864 ..     1    86 []    44.1  4.5e-10
PF00168.20.fs   1/1     986  1084 ..     1    88 []   119.7  4.8e-35
PF00168.20.ls   1/1     986  1084 ..     1    88 []   121.7  1.9e-33

Alignments of top-scoring domains:
PF00595.14.fs: domain 1 of 1, from 779 to 864: score 42.1, E = 3.7e-11
                   *->evtlekedkrgglGfsikggsdkga...dkgifvsevlpGsgaAeag
                      + +++   +++glG++i+gg++ ++++++ g++++++lpG g+Ae+ 
    KIAA0559   779    DSKDHTV-SGNGLGIRIVGGKEIPGhsgEIGAYIAKILPG-GSAEQT 823  

                   GrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   G+L +G q+l+ NG +l++ + ee++ ++ + +g e  + v+   
    KIAA0559   824 GKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSG-EAEICVR    864  

PF00595.14.ls: domain 1 of 1, from 779 to 864: score 44.1, E = 4.5e-10
                   *->evtlekedkrgglGfsikggsdkga...dkgifvsevlpGsgaAeag
                      + +++   +++glG++i+gg++ ++++++ g++++++lpG g+Ae+ 
    KIAA0559   779    DSKDHTV-SGNGLGIRIVGGKEIPGhsgEIGAYIAKILPG-GSAEQT 823  

                   GrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   G+L +G q+l+ NG +l++ + ee++ ++ + +g e  + v+   
    KIAA0559   824 GKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSG-EAEICVR    864  

PF00168.20.fs: domain 1 of 1, from 986 to 1084: score 119.7, E = 4.8e-35
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqk..........
                      L +++++A+nL p+D  ng sDP+Vkvyl++ ++ q+   ++ + + 
    KIAA0559   986    LIIHILQARNLVPRD-NNGYSDPFVKVYLLPGRG-QVmvvqnasaey 1030 

                   .kkTkvikktlNPvWNEtFtFe.vpppdlqe.tLeieVyDydrfgrddfl
                   +++Tk ++k+lNP+WN+t  + +++ ++l+++tLe++V+Dydrf+++dfl
    KIAA0559  1031 kRRTKHVQKSLNPEWNQTVIYKsISMEQLKKkTLEVTVWDYDRFSSNDFL 1080 

                   Gevs<-*
                   Gev    
    KIAA0559  1081 GEVL    1084 

PF00168.20.ls: domain 1 of 1, from 986 to 1084: score 121.7, E = 1.9e-33
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqk..........
                      L +++++A+nL p+D  ng sDP+Vkvyl++ ++ q+   ++ + + 
    KIAA0559   986    LIIHILQARNLVPRD-NNGYSDPFVKVYLLPGRG-QVmvvqnasaey 1030 

                   .kkTkvikktlNPvWNEtFtFe.vpppdlqe.tLeieVyDydrfgrddfl
                   +++Tk ++k+lNP+WN+t  + +++ ++l+++tLe++V+Dydrf+++dfl
    KIAA0559  1031 kRRTKHVQKSLNPEWNQTVIYKsISMEQLKKkTLEVTVWDYDRFSSNDFL 1080 

                   Gevs<-*
                   Gev    
    KIAA0559  1081 GEVL    1084 

//